Nicotiana tabacum (common tobacco): 107760653
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Entry
107760653 CDS
T04643
Name
(RefSeq) putative CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107760653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107760653
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107760653
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107760653
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107760653
NCBI-ProteinID:
XP_016434225
UniProt:
A0A1S3X2L2
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Position
18:complement(115149519..115150817)
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AA seq
279 aa
AA seq
DB search
MAVEKTVLDPNPIKIREVWSDNIDSEFELIRTAIDQYPYISMDTEFPGVIFKPEVGSFQQ
NRRRHGQHYKLLKSNVDVLNLIQLGLTLSDADGNLPDLGSGGVHRYIWQFNFSDFDVARD
RHAPDSIELLRRYGIDFEKNKEFGVDSARFAELMMSSGLVCNDSVNWVTFHSAYDFAYLV
KILTRRELPGKLEDFLGILRVFFGNNVYDVKYLMRFCELYGGLDRVAKALEVSRAVGKCH
QAGSDSLLTWHAFQKIRDVYFVKDGPGKHAGVLYGLEVY
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgaaaaaactgttttggatccgaacccgattaagatccgggaagtttggtcc
gataatattgattctgaatttgagcttatacgaacagctattgatcagtacccttacatc
tcaatggatactgaattcccgggcgttattttcaagccggaggttggttctttccagcaa
aatcgccggcgacatggacaacattataagttgttaaagtcaaacgttgacgttttgaac
cttattcagctaggactaacgttgtcggacgccgacggtaatttgccggatttgggttcc
ggcggggtgcaccggtacatatggcagttcaatttttccgatttcgacgtggcgcgtgat
cgtcacgcgccggactccatcgagcttttgcgtcgctacgggattgacttcgagaagaac
aaggaatttggggttgactcggcgcgttttgccgagttgatgatgtcttctgggttggtt
tgtaatgactcagtgaattgggtcacgtttcacagcgcgtacgatttcgcttacctggtg
aaaattctcacgcgccgggagcttcccgggaagttagaggactttttgggaattctcagg
gtgttttttggaaataatgtttatgatgtaaagtacttgatgaggttctgcgaactttac
ggtgggttagaccgggttgcgaaggccctagaggtgagccgggcggtcgggaagtgccat
caagccggttcagatagcctgttgacgtggcatgcattccagaaaattagggacgtgtac
tttgtaaaagacggaccgggaaaacatgccggcgttttgtatggattagaagtgtattag
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