Nicotiana tabacum (common tobacco): 107761593
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Entry
107761593 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107761593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107761593
03009 Ribosome biogenesis [BR:
nta03009
]
107761593
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107761593
Spliceosome [BR:
nta03041
]
Complex A
U1 snRNP components
U1 related factors
107761593
Complex B
107761593
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107761593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107761593
NCBI-ProteinID:
XP_016435315
UniProt:
A0A1S3X644
LinkDB
All DBs
Position
Un
AA seq
1146 aa
AA seq
DB search
MATAEAAAASLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPSALPPPLP
PGQPPEAATPKLAPIPGASTVQQNDAHGQQSQQACTQQGQQMTQMSQHSQVTQQVPHGSQ
GVSIGQQQGSAAGPAMQQVPFTLQFRPQMIQQPGHQMPSQMGQTPNQPGPHVSQPMMQQI
MPQQLGSQTQAFPGVQMGQPHGYQFSHHQTPQHITYPQNLPPQGQQIPQQNQHVPQNQQL
SHQQEHKMGFQQREDVDFPHGRQVGFSPQQVQQTGASSAQNLPVGIGSVIRPQMSAQPAQ
ALPFGGTSVNIQQPSSLGQWQQNANDSGHKPPGPLFPGEMGSGMVHGQELDTPPVGSKGY
EENSFGRGGNEYYYTSNMDGRIRPPLQQPKLAAIPIARNQHETRMGDPLLQNPAPVLPSG
FNSTGGPPMQNIYGQAAGGPPFPNPNLMRPPAALTGPPGAIHPSSVEVYLQKHEVTATGG
DVPAPFMTFEDTGFPPEILREIHVAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLG
YLIPAFVHLKRRRNNPQNGPTVLVLAPTRELATQIQDEALKFGRASRVSCTCLYGGAPKV
HQLKELERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNE
IPPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYVEVVPQMEKQR
RLEQILRSQERGSKAIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQFRSG
KTPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFLSDQDW
KYAPDLVKVLEGANQHVPPNVREMALRAGGRDRGGMNRFDLVEGDGSRTRWDSGGRGGMR
DGAFGGRGGMRDGGFGGRGGMRDGGFGSPGGMSDGGFGGRGGRESNFGGRGGRESNFGGR
GGRDGHFGGRGGMRDSYFGGRGGRGGWDRNSRYDSSDMRGRDRGRGRGHFDNRRDMPSRS
RARSYSPSPERVRTWGSRSRSRSRSRSRSRSRSYSRSYSRSRSYSPRHSRSRSRSHDRYQ
RRPRQSKFDQMEPDPGMSNVQAAPSGMPPLPVGAPIDGFSGAAPVEFKPNTEVAPESGMS
PMSPGA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgctgaggcagctgcggcttccttaggacctcgttatgcacccgatgatcca
actttaccgcaaccttggaagggcttaattgatggcagtactgggttattgtactactgg
aatccagaaactaatgttactcaatatgagaagccatcagctttaccccctccactgccg
cctggtcaaccgccggaagctgctacacctaagttggctcctataccaggagctagtaca
gtgcaacaaaatgatgctcatggccaacaaagccagcaggcgtgtactcaacaaggccaa
caaatgacacagatgtcccaacattcacaagtaacacaacaggtaccacatggatcacaa
ggtgtttcaatagggcagcaacaaggatcagcagcgggtcctgccatgcaacaggtaccc
tttacgctgcagtttcgaccccaaatgatccagcagcctggtcatcagatgccatctcaa
atgggacaaactcctaaccagccaggcccacatgtttctcaaccaatgatgcaacaaata
atgccacaacaacttggctcccaaacacaagcattcccaggtgtacagatgggacaacca
catggttatcaattttctcatcaccagacaccacagcatattacgtatccacagaacttg
cctccacaaggacagcaaattccacagcagaatcagcatgttccccagaatcaacagctc
tcccatcaacaagagcataaaatgggatttcagcaaagagaagatgttgatttcccccat
gggagacaagttgggttttcgccacaacaagttcagcaaactggtgcatcctctgctcag
aatctgcctgtggggattggttctgttatcagacctcagatgtctgctcagcctgctcaa
gctttgccgtttggtgggacttctgtaaatattcaacaaccatcatctttggggcagtgg
cagcaaaatgccaatgattcaggtcacaagccacctggtccactatttcccggtgaaatg
ggctcaggtatggtacacggccaggagctggatacgcctccagttggatcaaagggttat
gaggaaaactcatttggaagaggaggaaatgagtattattacaccagtaacatggatggt
cgaattaggcctccgcttcagcaacccaagcttgcagctatacctatagcaagaaatcag
catgaaacgagaatgggtgatcctctgcttcaaaatccagcaccggttcttcctagtggg
ttcaatagtacaggtggccctccaatgcaaaatatctatggtcaagcagctggtggcccc
ccatttccaaatcctaacctcatgaggccacctgcagcactcactggacctcctggagct
attcatccatcgtccgttgaggtttaccttcagaagcatgaagtgactgcgacaggtggt
gatgtccccgctccattcatgacctttgaagatactggcttccctccagaaatactcaga
gagattcatgttgcgggattcacttcgcccactcccattcaggcacaaacatggcccatt
gcattgcaaaatagggatatagtagccattgccaagacaggttctggcaaaacattgggc
tatctgattcctgcatttgtccaccttaagcgacgccgcaacaatcctcaaaatggccca
acggtactggttttagctccaacacgagagcttgcaacacaaatacaagatgaagcgctt
aaatttggccgagcttcaagggtttcttgcacatgcttgtatggaggtgcaccgaaggtt
caccagttaaaagaactagagcgcggagcagacattgttgttgcaactcctggtcggctt
aatgacatccttgaaatgaaaagaattgactttaggcaggtttctcttctcgtgctagat
gaggctgatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgag
atacccccacaaagacaaacacttatgtacacagcaacctggcccaaagaagtgcgaaaa
atagctggcgatcttcttcgaaatcctgttcaggttaatatcgggaatgttgatcagctt
gcagcaaacaagtctatcacacagtacgttgaagtagtcccgcaaatggagaagcagaga
cggttggagcagattcttagatcccaagaaaggggttctaaagctattatattctgttcc
acaaaaaagttgtgcgaccaacttgcacgcagcattggccgaagctttggagccgcagct
attcatggagacaagtcccagggtgagagggactgggttctcaatcaatttcgctctggt
aagaccccaattttagtagcaactgatgttgctgctagaggactggacatacccgatata
agagtggtgatcaactatgattttccaactgggattgaggattatgttcatcgaattgga
agaactggtagggctggtgcaactggtatttcatacacctttttatctgatcaggactgg
aaatatgctccagatctggttaaagttctggaaggcgcaaaccagcacgtgcctccgaat
gtaagagagatggctttacgtgctggtggcagggatagaggtggaatgaaccgatttgat
cttgttgagggtgatggtagccgcacacgctgggattctggtggccgtggtgggatgagg
gatggtgcgtttggtggccgtggtgggatgagggatggtgggtttggtggccgtggtggg
atgagggatggtgggtttggtagtcctggtgggatgagtgatggtgggtttggtggccgt
ggtggaagggagagcaactttggtggccgtggtggaagggagagcaactttggtggccgt
ggtgggagagatggtcactttggtggccgtggtgggatgagggacagctattttggtggc
cgtggtggcaggggtggttgggacaggaattctcggtatgatagctcggatatgcgagga
cgtgacagaggccgagggcgtgggcattttgacaatagaagagacatgccgagtcggagt
cgagcaagaagttacagccctagtccggagagggtgcgaacatggggtagccgaagtagg
agtcgcagcagaagcaggagtcgcagcagaagcaggagctatagcaggagttacagccgg
agccgcagttatagccctaggcatagtcgcagccgcagccgtagtcacgatagatatcaa
aggagaccacgccaatctaaattcgatcagatggaaccagatccagggatgtcaaatgtt
caggctgctccatctgggatgcctccattgcctgtaggtgcaccaattgatggattttct
ggagctgcaccagtggaatttaaaccgaatacagaggtagctccagaatctggtatgtcg
cccatgtctccaggagcatga
DBGET
integrated database retrieval system
