Nicotiana tabacum (common tobacco): 107763122
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Entry
107763122 CDS
T04643
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107763122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107763122
03041 Spliceosome [BR:
nta03041
]
107763122
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107763122
Spliceosome [BR:
nta03041
]
Complex B
Other components
Prp19-related factors
107763122
Complex C
107763122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
107763122
NCBI-ProteinID:
XP_016437050
UniProt:
A0A1S3XAT8
LinkDB
All DBs
Position
Un
AA seq
914 aa
AA seq
DB search
MSIPKELYPSQDDLPYEEELLRNPFSLKLWWRYLVARADSPFKKRAVIYERALKALPGSY
KLWHAYLRERLELVRNLPVTHSQFQTLNNTFERALVTMHKMPRIWIMYLVSLTEQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEASERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEESNGEVGVEEDVDEEDDRLNVAKLEKKLREFWLNDDKDVDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQMKLHKSLRLWLLYVDLEESLGTLESTRAVYERI
LDLKIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEEAPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGVADDEMAALERQLVPPEDEAKGKEQSRVVGFVSAGVVESNGQKV
TTNNEDIELPEESDSEEEEKVEIAQKDVPAAVFGGLIRKREEGDEAEDDSAAKNKDSDGH
LGALERIKRRRQGS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccccaaagagctctaccctagccaagacgaccttccttacgaggaagagctc
ctccgcaacccgttcagcttaaagctgtggtggcgttatctagtggcacgagcagattcg
ccattcaaaaaacgagcagtgatttacgaacgagctctaaaagctctacccggaagttac
aaattatggcatgcgtatctccgcgaacgcctcgaattagttcggaatcttccagttact
cactcgcagttccaaaccctaaacaacactttcgagagagctctcgttacgatgcacaaa
atgccgcggatttggatcatgtacttggtaagtttaactgagcaaaagctcgttacccga
acccgacgcacatttgatagagcattatgtgcattgcctgttactcagcatgataggatt
tgggaaccttatttagtgtttgttagtcaaaggggaattcctattgaaacttcacttagg
gtttataggaggtacttgaagtatgacccttcacatattgaggatttgcttgagtttttg
ttgaattccgagctgtggcaggaggcgtccgagaggttagccggtgtattgaatgatgat
cagttttattctattaaagggaagactaaacataggctttggttggagttgtgtgacttg
ttaacacagcatgctactgaaatttcgggtttgaatgtggatgccataatacgaggaggg
attaagaagtttacggatgaggttgggaggctttggacgtctttggcggattattacata
aggaggaagttggttgagaaggcaagggatattttcgaagaagggatgaccactgtggtc
actgttagggattttagtgttatttttgatgcatactcgcagtttgaggagagtatgctt
gccttgaaaatggaggagatgagtgacagcgaggtggaggatgaagagagtaacggtgag
gttggggtggaggaagatgtggacgaggaggatgataggttgaatgtggcaaaattggaa
aagaaacttagagagttttggttaaatgatgataaggatgttgatttgagattagcgaga
ctagagcatcttatggataggaggccggaacttgcgaatagtgtccttctaaggcaaaat
ccacataacgtggaacaatggcatagaagggtaaaactttttgaagggaatccgacgaag
caaatattaacatacactgaggcagttagaactattgacccaatgaaggctgtgggaaag
ccacatactttgtgggttgcatttgcaaagctttatgaaaaccacaaggatattgcaaat
gcaagagtcatctttgataaggcagttcaggtgaactacaaaactgtggatcatcttgct
agtgtttggtgtgaatgggcagagatggaactacggcacaggaatttcaagggtgctctg
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaagaggagagttgctgct
gatggaaatgaaccagtgcagatgaagttacacaaatctctaaggctttggttattgtat
gtggatttggaggagagtctaggaaccttagagtcaactcgcgcagtatatgagagaatt
ttggatctgaaaattgctacaccccagattataatcaactatgcagtacttctggaggat
cataagtactttgaggatgcattcaaggtttatgagaggggtgtgaagatcttcaagtac
ccacatgtaaaggatatatgggttacctatctttccaaatttgtgaagagatatgggaag
tcaaagctggaacgagctagagagttatttgagcatgctgtagaagaggcccctgctgat
gctgtgaagccattgtatcttcaatatgctaaattagaggaagactatggtcttgccaag
cgggctatgagggtgtatgatcaagctacaaaagctgttccagcaaatgagaaattgagc
atgtatgagatttacatagctcgtgcggctgagatatttggtgttccaagaacaagggag
atatatgaacaagcaattgagtccgggcttccagacaaggacgtgaaagttatgtgctta
aagtatgctgaactggagaagagcctgggagagatcgaccgtgcccgtgcactatacaaa
cactcatcacaattcgcagaccctagatcagaccctgatttctggaataagtggcatgag
tttgaggtgcagcatggaaacgaggataccttccgtgagatgctccgtgtgaagaggagt
gtatctgcaagctacagccagacacattttatcctacctgagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggatgtgttgaaaaaagctggtgttgctgatgat
gagatggcagctcttgagaggcagttagtgcccccagaagatgaagcaaagggcaaagaa
cagagtcgggtagttggatttgtaagtgcaggagtagttgagtcaaatggacagaaagtg
acaacaaacaatgaggatattgagctacctgaggaaagtgattcggaagaggaagagaag
gttgaaattgcgcagaaggacgtccctgctgcggtgtttggaggtttaatccgtaagagg
gaagaaggtgatgaagcagaggacgactctgctgccaagaataaagatagtgatggccat
cttggcgctctagaaagaataaaacgaaggagacaaggctcttag
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integrated database retrieval system
