Nicotiana tabacum (common tobacco): 107763470
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Entry
107763470 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107763470
03041 Spliceosome [BR:
nta03041
]
107763470
03036 Chromosome and associated proteins [BR:
nta03036
]
107763470
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107763470
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107763470
mRNA cycle factors
Common to processing body (P body) and stress granule
107763470
Spliceosome [BR:
nta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107763470
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107763470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107763470
NCBI-ProteinID:
XP_016437440
UniProt:
A0A1S3XBY1
LinkDB
All DBs
Position
Un
AA seq
414 aa
AA seq
DB search
MACAQTGSGKTAAFCFPIISGIMRGHFPRPPRPRVAFPLALILSPTRELSCQIHDEAKKF
SYQTGVRVVVAYGGAPINQQLRELERGVHILVATPGRLVDLLERARVSLQMIRYLALDEA
DRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVG
SSTDLIVQRVEYVQETDKRSHLMDLLHAQRENGVHGKQALTLVFVETKKGADSLEHWLCM
NGFPATAIHGDRTQQEREYALRSFKTGHTPIMVATDVAARGLDIPHVAHVVNFDLPNDID
DYVHRIGRTGRAGKSGLATAFFNENNSSLARSLSDLMTEANQEVPAWLSRFAARSNYGGK
NRRGGARFGGRDFRRDSSYNRGAADYYGGANMNSGYASGGYSSYGAAGVTSAWD
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcttgtgctcaaactggttctggaaaaactgctgctttctgcttccccattataagt
ggaatcatgaggggccactttcctagacctccacgtccacgtgtggcatttcctctagct
cttattctctccccaacgagggagctctcatgccaaattcatgatgaagctaaaaaattt
tcatatcaaactggcgtcagggtggttgttgcctatggtggtgctcctataaaccaacag
cttcgagaattagagagaggtgtgcatattcttgtggcaacccctgggcggttagttgat
ttacttgagagagcaagagtctcgttgcagatgataaggtatttggctctagacgaggca
gatcgaatgcttgatatgggttttgaacctcaaataaggaaaatagtgcaacagatggac
atgcctccgccaggtgtacgacagaccatgctgttcagtgccactttcccaaaagagatt
cagagactagcctcggattttctatccagttatatctttttggctgtgggaagggtcggc
tctagcacagatttgattgtccaaagagttgaatatgttcaagagactgacaagagaagt
cacttgatggatcttcttcatgcacagagggaaaatggtgttcatggcaagcaagctctt
acccttgtttttgtggagactaagaagggagccgattcactggagcattggctttgtatg
aatggtttccccgctactgctattcatggcgatagaactcagcaggaaagagaatatgcg
ctgagatcctttaaaactggtcacacaccaattatggttgcaacagatgtggcagcacgt
ggtctcgatatcccccatgttgcacatgttgtcaattttgacctgccaaatgacattgat
gactatgtgcaccgtattggaagaacaggtcgagcaggaaaatcgggtttagctactgcc
ttcttcaatgagaacaattcttcattggcgagatcactgtctgacttgatgacagaagca
aaccaagaagtacctgcctggctctctcgctttgctgctcgatctaactatggaggcaaa
aatcggcgtggtggagctcgttttggtggtcgtgactttcgaagagattcctcttacaat
cgaggcgctgcagactattatggtggtgccaatatgaacagcggatatgcatctggtggg
tattcatcatatggagcagcaggtgtgactagtgcatgggactaa
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