Nicotiana tabacum (common tobacco): 107764136
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Entry
107764136 CDS
T04643
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107764136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107764136
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107764136
mRNA degradation factors
5'-3' decay
Decapping complex
107764136
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GFIT
Other DBs
NCBI-GeneID:
107764136
NCBI-ProteinID:
XP_016438159
UniProt:
A0A1S3XEG8
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Position
13:complement(38871124..38880404)
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AA seq
822 aa
AA seq
DB search
MERSNSRDIKGLASSSSSSISDSALFDASQYAFFGRDISEEVELGGLEDEQENNDLAVGG
GLGDDEIHEYHLFEKDEGSVLGSLSDLDDLATTFSKLNRIVIGPRHPGVIGDRGSGSFSR
ESSSAAEWAKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVHLAESKPLYRTSSYPEQ
PPQPPQLQHYSSEPILLPKSAFTSFPPPGGRSQPSPHGLSRQNMSSLSAGPQSPYSTANL
SSLSNSNMHLTGLPHGLHYGGNIPQLNPTGLSLNTRLQNQWSSHAGLIHGDHSGLLDSVL
QHQFPHQSSLLSPQFMSPQQLQQQRLHPSVQPSLAHFSALRSQLFSSFSSPSHLGKYGMA
DLRDPRSKPSHKVRQNVRFSKQSSDAASHKSESNVPQFRSKYMTGDEIESILKMQHSAAH
GNDPYVDDYYHQARLAKKAAESRSKHRFCPNKEQSSRSRNSTESQPHLHVDAHGRVSFSS
IRRPRPLLEVDPPGFVCIEGSGEQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLL
QFSQPQGGGAQLKRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGR
KLISRYLQLLLPGGELVRIVCMAIFRHLRFLFGGLPPDPEAAETITDLAKIVSKCVSGMD
LNSLSACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATHLLTDSQAANSFSMPNP
ALWQASFDAFFGLLTKYCLSKYDSIMQSILTQSQSDAEMISPEAARAVSREMPVELLRAS
LPHTDEHQRKLLLNFAQRSMPVTGFNAHGGSSGHINPESVSC
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccaatagcagagatattaagggcttggcgagctcctcctctagctccatc
tcagatagtgcgctcttcgatgcatcacagtatgcattctttgggcgagatatatcagag
gaagttgaattgggtggtttagaggatgaacaagagaacaatgatctggctgttggaggt
ggattaggtgacgacgagatacatgagtatcatttatttgagaaagacgagggatcagtc
ttgggctctttgtcagacttggatgatctagcaacaacattttcaaagttgaacagaatt
gtaattggaccaaggcatcctggtgtcattggtgaccgtggatcaggttcattttcaagg
gaaagttcctctgcagctgaatgggcgaaagaagcagactttcacgattggtttgatcag
catttatctgacactgaatgttaccaggaaagcaaaaaatggtcctcacagccacatatc
tctgcagtgcatcttgcagagtcaaaaccattgtatagaacatcctcataccctgagcaa
cccccacaacccccacaacttcagcactactctagtgaacccattttattacccaaatca
gctttcacttcttttcctcctcctggtggtagatctcaaccctcaccacacggcctttcg
cgacaaaacatgtcatctctttctgctggacctcagtctccctattcgactgctaatctg
tcttctttgtcgaactctaatatgcatttgactggcttgcctcatgggctccactatggt
ggaaacatcccgcagttgaacccaactggtctctctcttaataccaggttgcaaaaccag
tggagcagccatgcaggacttatccatggggaccattctggtctcttagatagtgtctta
cagcatcagtttcctcatcaaagcagtttattatccccccagttcatgtccccacagcag
ctgcaacagcagagactgcatccttcagttcagccgtctttagctcatttttctgcacta
agatctcaattgtttagttccttctcttcaccatctcatctaggaaagtatggaatggct
gatttgagagatccacgatctaagccatcacacaaggttagacaaaatgtgcgcttttct
aaacaaagctctgatgctgctagccacaaaagtgaaagtaatgtgccacagttccgatcc
aagtatatgactggtgatgaaatagagagcatcctgaagatgcagcattctgcagcacat
ggcaatgacccatatgtagacgattactatcaccaggcccgccttgcaaagaaagcagcc
gagtcgaggtcaaaacatcgtttttgcccaaataaggagcagtcttctcggtcacgtaat
agcacagaatcacagcctcatctccatgttgatgctcatggacgggtttcattttcttcc
atccgcaggcctcgcccacttcttgaagttgatccaccgggctttgtttgcattgaaggc
agtggtgaacagaagatatccgagagacctttggaacaggagccaatgcttgcagctaga
attactatagaagatggtttctatcttctcactgaggtagatgacattgacaggctcctt
cagtttagtcagccccaaggcggcggtgctcagctcaagcggaagcggcagatcctactg
gaaggcatggcagcctcacttcaactagttgacccacttggcaaaagtggcagttctgtt
gggcttaccccaaaagatgacattgtatttctgtggttagtgtctcttcccaagggccga
aagctcatctcaaggtatcttcagcttcttctacctggtggcgagcttgttagaatagtt
tgtatggcaattttccgccatttgaggtttttgtttggcggccttccacctgatccagaa
gcagctgagaccatcactgatcttgcaaaaatagtctcaaaatgcgtcagtggcatggac
cttaattcactcagtgcttgtcttgctgctgtcgtttgttcctcagaacagccacctctt
cgccctcttggaagccctgctggagatggagcctccattattctaaaatctgttcttgaa
agggcaactcatctgttaactgattctcaggctgctaacagcttcagcatgcctaatcct
gccctttggcaggcatcttttgatgccttttttggtttgcttacaaagtattgtctgagt
aagtatgacagtatcatgcaatccatactaacacagtctcagtcagatgctgaaatgatt
agtccagaggctgcaagagccgtaagcagagaaatgcctgtggaacttttacgtgctagt
cttccacatacagatgagcaccaaaggaaactgttgttaaattttgctcagcggtccatg
cctgttaccggattcaatgctcatggtggaagcagtggacatataaatcctgaatctgta
agctgttag
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