KEGG   Nicotiana tabacum (common tobacco): 107764723
Entry
107764723         CDS       T04643                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta04120  Ubiquitin mediated proteolysis
nta04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107764723
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    107764723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nta04121]
    107764723
Enzymes [BR:nta01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107764723
Ubiquitin system [BR:nta04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107764723
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107764723
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR19_1st WD40_like Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 107764723
NCBI-ProteinID: XP_016438813
UniProt: A0A1S3XG39
LinkDB
Position
Un
AA seq 288 aa
ATAGVSRRIKVFDFSSVVNEPADAQCPVVEISSRSKLSCLSWNKYAKNHIASSDYEGIVT
IWDVTSRQSVMEYEEHEIRAWSVAFSHTDPSMLVSGSDDCKVKVWCMKQEASVISIDMKA
NICSVKYNPQSSFHIAVGSADNHIHYYDLRNIKQPLHIFSGHHKTVSYVKFVSNNVLASA
STDGTLRLWDVKENIPLRTFRGHTNEKNFVGLVVNSQYIACGSETNEVFVYHKAISKPAA
SHKFDSDQNDPDEDMGSHFISSVCWKRESRTILTANSQGIVQVLVLTA
NT seq 867 nt   +upstreamnt  +downstreamnt
gctacagctggcgtgtcgagaagaatcaaggtctttgacttttcatcagtggtaaatgaa
ccagctgatgcacaatgtcctgttgttgaaatatcttcacgatccaagcttagttgtctg
agctggaacaagtacgcaaagaaccacattgcgagcagtgactatgaaggcatagtaacc
atttgggatgtgaccagtcgtcagagtgtgatggagtatgaggagcatgaaatacgagca
tggagtgttgctttctctcatactgatccttctatgcttgtgtctggcagtgatgattgc
aaggtcaaagtttggtgcatgaagcaggaggcaagtgttattagcattgacatgaaagca
aacatttgctctgtgaaatacaatcctcaatccagctttcatatagctgtgggttctgct
gataatcatatccattattatgacttgagaaatattaagcagccgctgcatattttcagt
ggacaccataaaactgtttcatatgtgaaatttgtatccaacaatgtgctggcgtctgca
tcaacggatggtacattgcgtttgtgggatgtcaaggagaacattccactgcgaactttt
agaggacatacaaatgagaagaactttgtgggtcttgtagtaaacagccaatacattgcc
tgtggcagtgaaacaaatgaagtgtttgtctatcacaaggcgatttctaagccagcagca
agccacaaatttgattctgaccagaatgatccagatgaggacatgggatcacatttcatc
agttctgtttgttggaagcgcgagagccgaaccattttaacagcaaatagtcaagggatc
gtacaagtgcttgttcttactgcttga

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