Nicotiana tabacum (common tobacco): 107766763
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Entry
107766763 CDS
T04643
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04120
Ubiquitin mediated proteolysis
nta04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107766763
04120 Ubiquitin mediated proteolysis
107766763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nta04121
]
107766763
Enzymes [BR:
nta01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107766763
Ubiquitin system [BR:
nta04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107766763
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_Vps41
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107766763
NCBI-ProteinID:
XP_016441093
UniProt:
A0A1S3XME3
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All DBs
Position
4:55217189..55224572
Genome browser
AA seq
530 aa
AA seq
DB search
MVRLQTYAGLSIIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLALMCILWQL
TKKIFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTTLSHVRIVSFLGFLLLIDSLFLYDSVSYLIQTRQASVSLFFAFEYM
ILVTTTVSTFVKYVFYISDMLMEGQWERKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRRITSNMNDRFPDATPEELDVSDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTNVVGSRPDAQQGPGSSGAST
SQSAQANTVANNNVSQHQARLQAAAAAAAVYQKSFVYPSVPTLAWSPGYAPVPPYYCPTG
SSVNVHPDGERASNEQSPQHQLANMPFAQYPQCGFLPFQYPGANNLSIPNAQLEAHKILL
QQQIEVLQNQLKLLENPNTQKPADALGISDSKGKTISSENSQGQSEGAEM
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggttacaaacttatgcggggcttagcataatagctacactggccgttatttat
catgcgtttaatagcagaggccaattttacccagcaatggtttatttatcaacgtccaag
atcagtctggttcttcttcttaacatgggtcttgccctcatgtgcattttgtggcagctg
actaagaaaatcttccttggttctcttcgagaggctgaggtggagaggctgaacgagcag
tcttggagggaactcatggaaatactttttgccatcacaattttccggcaagacttctca
gttatgtttcttgcaatggtaactgcactcttgcttatcaagggcttgcactggttggct
caaaagagggttgagtatattgaaacaaccccaactgttactacgttgtcccatgttcgc
atagtctccttcttgggctttctcctcctcatagacagtctcttcttgtacgactctgtc
agctatttgattcagacaagacaggcatctgtttctctattctttgcattcgagtacatg
atacttgtgacaacaactgtctcaacttttgtaaaatatgtcttctacataagcgacatg
cttatggaaggacaatgggagaggaagcctgtctatactttctacttagaacttatccga
gacttgctccacttgtctctgtacttgtgcttcttcatggtgattttcatgaactatggc
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaagattcgagtt
gccgattacatacgctatcggaggatcacttcaaatatgaatgaccgttttccagatgct
acaccagaagagctcgatgtaagtgatgctacctgcatcatatgtcgtgaggagatgacc
actgctaagaaacttatttgtgggcatctgtttcatgtacattgcctccgttcatggcta
gagcgtcaacacacctgtcctacttgcagagcccttgttgtgccagctgaaaatgggacg
aatgtggtaggatcacgaccagatgctcaacaaggccctggatcaagtggtgcaagtaca
tctcagagtgcgcaggcaaataccgtggcaaataataatgttagccaacaccaggctaga
ctccaagctgcagcagcagcagcagcagtttatcagaagtcctttgtttacccttctgta
ccaacgctagcgtggtctcctggatatgctccagttcctccgtactattgtccaacaggc
agttctgtcaatgtgcacccagatggggagcgggcatcgaatgaacagtcaccgcaacat
cagttagcaaatatgccctttgctcaatatccacaatgtggtttcctcccttttcagtat
cctggtgctaacaaccttagtattccaaatgctcaacttgaggcccataagatactttta
cagcaacaaattgaggttctgcaaaaccagctcaagcttttagagaatccaaacacacag
aaaccagcagatgctttaggaatttctgatagtaagggaaaaacaatttcgtcagagaac
tcccaaggacaaagcgaaggtgcagaaatgtga
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