Nicotiana tabacum (common tobacco): 107767550
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Entry
107767550 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107767550
09122 Translation
03013 Nucleocytoplasmic transport
107767550
03015 mRNA surveillance pathway
107767550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107767550
03041 Spliceosome [BR:
nta03041
]
107767550
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107767550
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107767550
Spliceosome [BR:
nta03041
]
Complex C
Other components
EJC/TREX
107767550
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107767550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ApbA
Motif
Other DBs
NCBI-GeneID:
107767550
NCBI-ProteinID:
XP_016442073
UniProt:
A0A1S3XQ54
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKLHDSFSGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPAICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgatgcatatgaagaggagcttctcgactatgaagaagat
gatgaaaaactccatgattccttctccggaaaagtcaacggcgagtccgccaaaaagggt
tatgttggtattcacagttcgggtttcagagattttcttctaaagccagagctattgcgg
gctattgtggactctgggtttgagcatccttctgaagtgcaacatgagtgtattccacaa
gctattctgggaatggatgttatatgccaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccctggtt
ctatgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcaca
tatctgcccgatatcaaggttgctgttttctatggtggtgtcaacatcaaactccataag
gagctgctgaagaatgagtgtccacatattgtcgttggaactcctggaagagtacttgca
ttggcaagagacaaggacctgtctttgaggaatgtgaggcattttatactagatgaatgt
gacaagatgcttgaatcccttgacatgaggagagacgtgcaggaaatcttcaaaatgact
cctcatgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtt
tgcaagaaattcatgcaagatccaatggaaatttatgttgatgatgaggccaagttgacc
ctgcatggacttgtacagcactacatcaaattgagtgaaactgaaaaaaaccgtaagctg
aatgacctgttggatgctttggacttcaaccaagttgttatttttgtcaagagcgtgagc
agagcagcagagttgaataagttacttgtggagtgtaattttccagctatctgcatccac
tctggcatgactcaggaagaaagattgacacgctacaagggtttcaaggaagggcacaag
agaattcttgtggcgactgatttggttgggagaggcatagacattgaaagggttaacatt
gtcattaactatgacatgccagattccgcagatacttaccttcacagagtgggaagagct
ggtagatttggaaccaaaggccttgccataacatttgtgtcctctgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagatt
gatacttctacatacatgccatcttag
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