Nicotiana tabacum (common tobacco): 107767706
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Entry
107767706 CDS
T04643
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107767706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107767706
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107767706
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107767706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107767706
NCBI-ProteinID:
XP_016442278
UniProt:
A0A1S3XQP4
LinkDB
All DBs
Position
Un
AA seq
708 aa
AA seq
DB search
MKKQCMLKPLIQISHAPITSFASRRRALSSSSSSSFALKNVTKSNFESALNDLRGLVRDA
DFVAVDLEMTGVTSAPWRDSFDFDRYDIRYLKVKDSAEKFAVVQFGICPFRWDSHKKSFL
AHPHNFYIFPRQEIPGSNQSCEFLCQTASLDFLAKYQFDFNVCIREGVSYLSRSQEEEAL
ERISSTFMDESSDSVYGLREDAEFPLVRMADVLFAERMKNTIREWHASLLSKGSSSSEIK
QMSTDPNQRFQMVFFKTRPALALSGFTSRQLRVIKSVTKKHFKDLAYVRVAGEATSPQQL
IVYTDSNDDKDLLMKEVKEDLRKEAEIKVKSAVGFRHVIDLLSSERKLIVGHNCFLDMAH
IYSKFIGTLPLTAEDYVSSIQKYFPCIIDTKILLNANGVFQQRVNKSSTSLSRAFVSICP
QIALGVKTSGLADRPCVEVEVQVDEKRSLNWNSGAKHEAGYDAFMTGCIFAQACNHLGID
FTLHVLAGGLPKETKLQNYINRLYLSWVSGDIIDLSTGKCTTDTSASSNLKSRYQEISFP
SIVLLWGLTSKLKAREIKACIVKVFGPNSISSVYHLDESAVFIQFSKPELVSKFLEIKET
LSRNSDPISVLHPLSDMLNANCTHAANYDVYHQICSSPISKKLFADQAEAVGIKHKTASS
RAEGKKKGNQVNRVFDEVVDDMMSSSYGYSETDRSADSFYIDEALASK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacagtgtatgttgaaacccctaatccaaatatcccacgctccgatcacctct
ttcgcttcgcgccgccgcgccctctcttcctcttcttcctcttccttcgcgctcaaaaat
gttaccaaatcgaacttcgaatcagctctcaatgacctacgaggtcttgtacgcgacgcc
gatttcgtcgctgtcgatttggaaatgaccggagtaaccagcgctccttggagagattcc
ttcgacttcgaccgatatgatattcgttacctcaaagttaaggactccgccgagaagttc
gccgttgttcagttcggcatttgtcctttccgttgggactctcacaagaaatcctttctc
gcgcatccacataacttttatatattcccacggcaagaaatccctggtagcaaccaatcc
tgtgagttcctttgccagacagcctcacttgattttctggcaaaataccagtttgatttc
aatgtgtgcatacgtgaaggagtctcttatttatccagaagccaagaagaggaagcactg
gaacgtataagttcaacattcatggatgaatcatcggattccgtgtatggcttgagagaa
gatgcagagtttccattggttaggatggcagatgttctatttgctgaaagaatgaagaac
acaataagggaatggcatgctagtttgttaagtaagggaagcagtagctctgaaattaaa
caaatgtcaactgatccaaaccagagatttcaaatggttttcttcaagacccgtccagcc
cttgcccttagtgggtttacttctcgccagctaagggtgattaaatcggtcactaaaaag
catttcaaagatctagcctatgtcagagtagctggcgaagcaacatctccgcagcaattg
attgtctatacagattccaatgatgacaaggatctactgatgaaagaggtgaaggaagac
cttcgtaaagaagcggaaataaaggtcaaatctgctgttggatttcgacatgttattgat
cttctttcctcggagcggaagttgattgtcggacacaattgctttcttgatatggcacat
atatacagtaaattcattggtacactacctttgactgctgaggactatgtgtcttccatt
cagaagtacttcccttgcataattgacaccaaaatactcttgaatgcaaacggtgttttt
caacagagagtgaataaaagcagcacatcactatccagagcgtttgtctctatctgtcct
caaattgctttaggtgtcaaaacttctggtttggctgatagaccgtgtgtagaggtggag
gttcaagtagatgaaaaaagatccttgaactggaactcaggggccaagcacgaagctggc
tatgatgcatttatgactggatgcatttttgcacaggcgtgcaatcatctaggcattgat
ttcaccctccatgtgcttgctggaggattacccaaggagacaaagcttcagaattatatc
aatcgcctttaccttagctgggttagtggagacatcattgatctaagtactgggaaatgt
acaacagacacctcagcttcgagtaacctcaaaagtcggtaccaggagatttcctttcct
agcatcgttttgttgtggggattaacatctaaactaaaagcaagggagatcaaagcttgt
atagtaaaagtctttggcccaaattctatttcctctgtctaccatttggatgaaagtgct
gtctttattcagtttagcaagccagaactggtttctaagtttctggaaataaaggaaact
ctaagtaggaacagcgatccaatttcagtgttgcatcctctttcggatatgctgaatgcc
aactgcactcacgcagctaactatgatgtgtatcatcaaatatgcagttcacccatctca
aagaaattatttgcagatcaggctgaagctgttggtatcaaacacaaaacagcatcatcc
agggcagaagggaaaaaaaagggaaatcaggtaaatagagtgtttgatgaggtagtagat
gatatgatgagttcatcatatggttattctgaaacggatagatctgccgattctttttat
atcgatgaagctctggcaagcaaatag
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