Nicotiana tabacum (common tobacco): 107768930
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Entry
107768930 CDS
T04643
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107768930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107768930
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107768930
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107768930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CRS1_YhbY
NikR_C
YIEGIA_cap
Motif
Other DBs
NCBI-GeneID:
107768930
NCBI-ProteinID:
XP_016443587
UniProt:
A0A1S3XV67
LinkDB
All DBs
Position
Un
AA seq
494 aa
AA seq
DB search
WFGPLAKAVLAQSIYLVHFISKRPALFPVGGRTPERVKNARKKFCSGDALQITAASTSLL
LPIHFPTRFSPFLSPSNQVFKRAVTIGPNFRVQKCDLRLVNSGRYFCTSGKSGETSNGGR
NDAVAVAESSGEFKEDKIKRKKLKGKREVVKWLKFFRWKKKKELQRMTAEEKILFKLSKA
RKKEERLLEALKKVEPKEISEATHDPEILTPEEHFYFLKMGEKCKNYVPVGRRGIYQGVI
LNMHLHWKKHQTLKVVVKTFSPEEVKEIAAELARLSGGIVLDIQDDNTIIMYRGKNYSQP
PTEIMSPRSTLSRKKALDKSKYRDSLKAVKRYIPRLEQDLELLRLQAENKTGAPDNNQET
GFENFSHAHCPDQQIGASDKLKRLMIENEEQGEEDDSMVDTDIGSASEDLSDIFETDSEE
EDKEKIEEPLYLDVFEKFPVQGNGDAHDFEEDLLQISSNSRREKSPGKDVDTPALDEVDR
IILQAASLLKKRRR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
tggtttgggcctttagcgaaagccgtactagcacagtccatttaccttgttcattttatc
tcaaaaaggcctgctctgttccccgtcggcggtcggacaccagaaagagtgaaaaatgct
aggaagaagttttgttccggcgatgctctgcaaatcacggcagcttcaacatctcttctt
ctacccattcattttccaacccgttttagcccattcctctccccatcaaaccaggttttt
aagagagcagtcacaattgggccaaattttagagtacaaaaatgtgatcttagattggta
aattcgggtcggtatttctgcacgagtggcaaatccggggaaacgtcgaatggcggtaga
aatgatgctgttgcagttgcagagagttctggtgagtttaaagaagataaaatcaagagg
aagaaactaaagggtaaaagagaggttgtgaagtggttgaagttcttcaggtggaagaag
aagaaagagctccaaaggatgactgcagaagagaaaatcctcttcaaattgagcaaggca
aggaaaaaagaggaaaggcttcttgaagctctgaagaaagttgagcccaaggagatatca
gaagctactcacgacccagaaatattgacaccagaagaacacttctactttttgaaaatg
ggggagaagtgcaagaattatgtaccagttgggagacgtgggatataccagggtgtgatc
cttaatatgcatctacattggaagaagcaccaaactctgaaagtggtggtgaaaacattc
tctccagaggaggttaaggaaattgctgcagagcttgcaagattaagtggtgggatcgtt
cttgatatccaggatgataacaccattataatgtacaggggaaaaaactactcccaacca
ccaaccgagataatgtctccaagaagtactctttctaggaaaaaggccttagataaatct
aaatacagagattccttaaaagctgttaagagatacattccacggcttgagcaagatctc
gagctgcttcgattgcaagctgaaaacaaaactggtgctcctgacaataatcaagagact
ggctttgagaattttagccatgcacactgtcccgaccagcaaattggggcatctgataag
ctcaaacggctaatgattgaaaatgaagaacagggtgaagaagatgattccatggtagat
acagatataggatcggcttctgaagatctttcagatatttttgagacagactctgaggaa
gaggataaggagaagattgaagaacctctttacttggatgtgttcgaaaagtttccagtg
cagggcaatggagatgcacatgattttgaggaggatttgcttcagatatcttctaactcg
aggagagagaaatcaccaggtaaagatgtcgatacaccagcacttgatgaggttgatagg
ataattctgcaagctgcatcgcttttgaagaaaaggaggagatga
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