Nicotiana tabacum (common tobacco): 107769372
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Entry
107769372 CDS
T04643
Name
(RefSeq) putative U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107769372
09123 Folding, sorting and degradation
03018 RNA degradation
107769372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107769372
03041 Spliceosome [BR:
nta03041
]
107769372
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107769372
mRNA degradation factors
5'-3' decay
Lsm complex
107769372
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107769372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
GDE_C
Motif
Other DBs
NCBI-GeneID:
107769372
NCBI-ProteinID:
XP_075094620
LinkDB
All DBs
Position
19:121887599..121893368
Genome browser
AA seq
166 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRAVHMLLQIENHLVLEDEEEEEVGMKVLLEDWQKA
LGVEWKMQVQKAGAEEDLVPSLVEKVEAVDVANHLQLETMKQDVSL
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctctctttgctcaagactgcacaggggcatcccatgttggtggagctaaaa
aatggagagacttataacgggcatttggtgaattgtgatacttggatgaacatccatctt
cgtgaagttatctgtacatcaaaggatggagatagattttggagaatgccagaatgttat
attcgtggcaataccataaagtatcttagagttcctgacgaggtgattgataaagttcag
gaagaaacaaaaagccgtgcagtccatatgcttttgcagatagaaaaccacctggtgttg
gaggacgaggaagaggaagaggtagggatgaaagtgctgctggaagactggcaaaaggca
ttgggcgtggaatggaagatgcaggtccaaaaggccggggcagaggaggacctggtgcca
agtctggtggaaaaggtggaggccgtggacgtggctaatcatcttcagttagagacaatg
aagcaagatgtgtcactttaa
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