Nicotiana tabacum (common tobacco): 107769413
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Entry
107769413 CDS
T04643
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03420
Nucleotide excision repair
nta04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107769413
09124 Replication and repair
03420 Nucleotide excision repair
107769413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nta04121
]
107769413
03400 DNA repair and recombination proteins [BR:
nta03400
]
107769413
Ubiquitin system [BR:
nta04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107769413
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
107769413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
107769413
NCBI-ProteinID:
XP_016444105
UniProt:
A0A1S3XW54
LinkDB
All DBs
Position
Un
AA seq
465 aa
AA seq
DB search
MRGRCGRRLQTENLGSFALIYSAIVLSRLESLLFNSPTTKISFLLTVAPSTPYRSISPFL
DLRFEVEGRYLLSSGSDASVAVYDVQRATDYDGNGLIAKHKPIAVVDKQHEQGHKYAIST
AIWYPIDTGLFITGSYDHYINVWDTNTTQVAVNFKMPGKVYKTAMSPVATSHMLIAAGTE
DVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRTGCFRV
LDQSHSQLGRRLTLLTRSVTNKSSTLKSSSAGPSSSAKGRPSHKKMGNGMCIKQSAIARQ
VRGAGKQRLHPGMLSSQDRATAHYGAVNGLKVTNDGMYLLSAGSDSRLRLWDIESGCNTL
VNFETSRLQATKAIQLAISHDSKLVFAPCMSTTKAFDLWSGKTMMDLRGHYENVNCCLYS
ALDQELYTGGNDRKILVWSSSKVATEELEGRDGQAFAMDQDNWSD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggaagatgtggaaggagattgcagaccgagaatttgggaagcttcgccctaatt
tattcagcaattgtattaagtcgtctcgagtctcttctcttcaactctccaactacaaag
atatcatttctcctcaccgtggctccgtcaactccctacaggtcaatttccccatttctc
gatctacgatttgaagttgagggacgatatctgttatcctctggttcggatgcatcagtt
gctgtttatgacgttcaacgtgcaactgattatgacggaaatggtctgattgcaaagcat
aagcccatagctgtggttgacaagcaacacgaacaggggcacaagtatgccatttccaca
gccatctggtatccaattgacacggggcttttcattacgggatcatatgatcattacatt
aatgtttgggatactaacactactcaggtggcagttaatttcaaaatgcctggaaaagtt
tacaagactgccatgtctcccgtggcaacatcacacatgttgattgctgctggaactgaa
gatgttcaagttcgtctttgtgatatttcttcgggtgcattttctcacacattatctggc
catcgtgatggagtaatgtcagttgaatggtctgcttctagtgagtgggttttggtaaca
gggggatgcgatggtgccattcgcttttgggacatcaggcgtacaggatgctttcgtgtt
ttagatcagtcccattctcagcttggaagacgcctaactctacttacacgttctgttaca
aacaagagttccacgctaaaatcatcttcagcaggcccaagttcatctgcaaaaggccgg
ccatctcataagaaaatggggaatggtatgtgtatcaaacaatctgcaattgctagacaa
gtgaggggggctggaaagcagagactacatccagggatgctgtctagtcaggatagagct
actgctcattatggtgctgtcaacggactaaaagtcaccaatgatggaatgtatcttctt
agtgcaggttctgattctaggttaaggttatgggatatcgaatctggttgcaatacactt
gtgaactttgaaacatcacgactacaggccaccaaagctatacaattagccatctctcat
gattcaaaacttgtatttgcgccatgcatgtcaacaactaaggcatttgatttgtggtcg
ggcaagacgatgatggatttacgtggacactatgaaaatgtgaactgttgtctgtacagt
gcactggaccaggaactatacacaggtggtaatgatcggaaaattctcgtttggtcttca
agcaaagtcgcaactgaagaattggagggaagggacgggcaagcttttgcgatggatcaa
gataattggagtgactga
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integrated database retrieval system
