KEGG   Nicotiana tabacum (common tobacco): 107774513
Entry
107774513         CDS       T04643                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
nta  Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:nta00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nta03009]
    107774513
Ribosome biogenesis [BR:nta03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    107774513
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML EIF3I Beta-prop_TEP1_2nd NBCH_WD40 WDR55 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_VPS8 Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR54 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_BBS7 Beta-prop_SCAP Beta-prop_LRRK2 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF12 VPS11_N Beta-prop_WDR19_2nd DUF4987 PROPPIN VPS8_N
Other DBs
NCBI-GeneID: 107774513
NCBI-ProteinID: XP_016449551
UniProt: A0A1S3YBC1
LinkDB
Position
Un
AA seq 449 aa
MTELELVIASSPTDAGIGCWDLHTGAEHLRHRSCSSPSHGLVCVGGRFLASSQLCASKSS
SGSILYWSWNKPQVEVKSFPAEPINPLVCNNEGTYMAGGGASGDIYLWQVATGKLLKKWH
AHYRAVTCLKFNDDQSLLISGSEDGSVRVWSLIMVFDDLLRDKARQPYEYSFSEHSLKVT
DVVTGYGGANAIVVSASEDRTCKVWSLSRGKLLRNIVFPSVIDAIALDPGEDVFYAGGRD
GKIYIAAVNAVADSNSNYGLHILGFLSEQSKAITCLALTTDGGLLISGSEDGMVRVWNTK
DHNIARIFRHAKGPVNNIVVVRQPSLLSTSGSVSSQVPSVKRHGASLPPPLEKYANSADD
NDYMAVIGPRFNHDRSVEASYISVQTLNNQILELQRQGSSAAAQMEIEKLKLDRGRSIQM
IQQWEKKYQNLHQFCVTELLDGEPAGNAV
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgacggagctggaattggtaatcgcgtcgtcgccgaccgacgccggtatcggctgttgg
gacctccatactggcgccgagcaccttcgtcatcggtcttgctcctccccttctcatggc
ctcgtctgtgtcggcggccgttttctcgcctcctctcaactctgtgcttccaaatcgtcg
tcaggatctatcctttactggtcctggaacaagcctcaagttgaagttaaaagctttcca
gcggaacctataaatccacttgtttgcaacaatgagggaacttatatggccggaggaggt
gcatccggtgatatatacttgtggcaggttgcgactggtaaactacttaagaagtggcat
gctcactatagggcagttacttgcttgaaattcaatgatgatcaatcgcttctgatttct
ggttcagaggatggatctgttcgagtttggtctcttataatggtatttgatgatttgttg
agggataaagcaagacagccttacgagtatagtttctctgagcattctttgaaggtgact
gatgttgtgactggttatggcggagctaatgcaattgttgtatctgcctcagaagataga
acttgcaaggtatggagtttgtcgagaggaaaattgttgagaaacattgtgtttccatca
gtaattgatgcaattgcattggacccaggagaagatgtcttctatgctggtggtagagat
gggaaaatttacatagctgcagtaaatgctgttgctgactccaacagtaattacggattg
cacattcttggttttctgtctgagcaaagtaaggctattacatgcttagcattaactact
gacgggggcttgctaatttctggatcagaggatggcatggttcgggtgtggaacactaaa
gaccataacatcgcccgaatttttaggcatgcaaaaggcccagttaacaatatagttgtt
gttagacaaccatctctcctgagtaccagtggatctgtgagttcccaagtaccctccgta
aagagacatggggcatcattaccacccccattggaaaagtatgctaactcagcagatgat
aatgattatatggcagtaattggcccccgattcaatcatgatagatctgttgaagcttca
tatatcagtgttcagacactaaataatcaaatcttagagcttcagagacaagggtcttct
gctgctgctcaaatggagatcgaaaagctaaaactcgaccgcggcaggtccatacaaatg
attcagcaatgggaaaagaagtatcaaaatctacatcagttttgtgtaaccgagctattg
gatggggaaccagctggaaatgctgtgtga

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