Nicotiana tabacum (common tobacco): 107776304
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Entry
107776304 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107776304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107776304
03012 Translation factors [BR:
nta03012
]
107776304
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107776304
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107776304
Translation factors [BR:
nta03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107776304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
R3H
HA2_C
DEAD
HA2_N
ATPase
Ank_2
nSTAND3
Ank_5
Rad17
AAA_7
AAA_19
ABC_tran
AAA_22
Sigma54_activat
NPHP3_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
107776304
NCBI-ProteinID:
XP_016451669
UniProt:
A0A1S3YHG3
LinkDB
All DBs
Position
Un
AA seq
1212 aa
AA seq
DB search
MASTATGASPSSSGFGKTRQKKGKRQQEVTNVAESTRIRVAQVLEQFRASNDEVYTFESN
LSNRDRAAVHILCRKMGMKSKSSGRGDQRRISIFKTKNTVETLEGKDALSCFKFFGEAKD
VLQDLFTRYPPDNGETSELAVGKHSKKVDKYRGNKDDVFCKPAMNKSEIAKRVESLSSRI
ENTPNLRQITVQKSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRMESRGGKHSSIVFCTNGVLL
RVLVTKGSASFNKKAPRKMGTNDISDITHIIVVLCISHDEIHERDRYSDFMLAILRDLLP
SYPNLRLVLMSATLDAERFSKYFGGCPVIKVPGFTYPVKTFYLEDVLSIVKSTENNHLDS
TSTAAMSEESTLTEEYKVALDEAINLAFSDDDLDPLLDLISSDGGPKVFNYQHSLSGVTP
LMVFAGKGCIGDICMLLSFGADCHLRANDGKNALDWAERENQTEAAELIKKHMEKSSSNC
EEQQHLLDKYLSTVDPELIDDVLIEQLLRKICIDSEDGAILVFLPGWEDINRTRERLRSS
QYFKDTSKFSVIALHSMVPAVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSG
RMKEKSYDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPE
IKRIPIEELCLQVKLLNPDCKIEEFLKKTLDPPVYETIRNAIIVLQDIGALSVDEKLTEL
GERLGSLPVHPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPTEKKRASAARAE
LASWYGGRSDQLAVVAAFEGWKSAKESGQESRFCSTYFISSSTMNMLSGMRKQLQSELLR
NGFIPGDGSSCSLNAQDPGILHAVLVAGLYPMVGRLLPPLKGDRRVVIETAGGDKVRLHP
HSTKFKLSFKKFFDRPLIVYDEITRGDGGLHIRNCSVIGPLPLLLLATEIVVAPGNEEDD
DDDDNDDDGSDYEDADEDDGEEDNFKADQGEKVMSSPENTVKVIVDRWIPFKATALDVAQ
IYCLRERLAAAILFKVSHPGKVLPEILAASVYAMACILSYNGMAGISSLLEPVDSLTTMV
SATEIGQPDRGSYNGMDMNPNNSLSSPMYHGQHQRSYTPHQRGGIHISKGSFIHGGGAMK
RDHPKRQRGNGS
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctacaggagcttcaccatcatcatctgggtttggtaaaacgaggcaa
aagaaagggaaaagacaacaagaggttacaaatgttgcagaatccactcggattcgggtc
gcccaagttcttgaacagttccgtgcttctaatgatgaagtgtatacatttgaatcaaac
ctttcaaatcgcgacagagctgcagttcatattttatgccggaaaatgggtatgaaatcc
aaaagttctgggcgtggggatcaacgtcgtatatctattttcaagactaaaaatacagtg
gagacactggaaggaaaggatgcactaagttgttttaaattttttggagaagcaaaagat
gttctacaggatttatttacaagatatccacccgataatggggagacaagtgaactagca
gttgggaaacacagtaagaaagttgataaatatcgaggaaataaggatgatgtgttctgt
aaacctgcaatgaacaagtctgaaattgcaaaaagggtggagtcactttcttcaagaata
gaaaataccccaaacctgagacagattacagtacagaagtctaagcttccaattgcttcc
ttcaaggatgtcattacatcaacagttgaatctaatcaggtggtcttgatctctggtgaa
actggatgcggaaaaactacacaggtcccccaatttattttggatcatatgtggggtaaa
ggtgagacatgtaaaattgtatgtactcagccccgacgaatttctgccacatcagtttct
gagagaatctctgctgaaagaggcgaaagtgttggcgacactgttggttacaagatacgg
atggaaagcagaggtgggaagcactcatcaattgtgttttgtaccaatggggttctactg
agggtcctggttaccaaaggaagtgccagcttcaacaagaaagctcccaggaaaatgggc
acgaatgacatttctgatataacccacatcattgtggtactttgcatttctcacgacgaa
attcatgaaagggatcgctactccgatttcatgctcgcgattctcagggacttgcttccg
tcatatccaaatttgcgtctggttctgatgagtgctacacttgatgctgaacgcttttca
aaatactttggcggctgcccagttatcaaagtcccaggatttacttatcctgtaaaaacg
ttttatcttgaggatgtactttctattgtaaagtcaactgaaaataatcaccttgattcc
acctcaaccgctgccatgtccgaggagtcaacattaactgaggagtacaaagttgcctta
gatgaagcaattaatttggctttttcagatgatgatcttgatccccttttagatctaata
tcttctgacgggggaccaaaagtgttcaattatcagcattctttgagtggagtgacacca
ttgatggtgtttgctggaaaaggctgtattggtgacatttgcatgctcctctcttttggt
gctgactgccatttacgtgctaatgatggaaaaaatgctctagattgggctgaacgggag
aatcagacagaagctgctgagctaattaaaaaacacatggagaaatcatcttccaattgt
gaggaacagcagcatttacttgacaaatacctatcaacagttgaccctgaactgattgat
gatgtccttattgagcaactattaagaaaaatatgtatagactcagaggacggagcaatc
ctcgttttcctccctggttgggaggatattaacagaacacgagagagattacgctcaagc
cagtacttcaaagatacgtctaagttttcagtaatcgctctccattctatggttccagct
gtggagcaaaagaaggtctttagacaccctccaccaggctgccgcaaaattgttctttca
actaatattgctgaaactgccattaccattgatgatgttgtttatgtaatagacagtgga
cgaatgaaagaaaaaagttatgacccttataataatgtatcaacgcttcaatcttcttgg
gtctcaaaagctagtgcaaagcaaagagagggtcgtgctgggcgctgccagccaggaatt
tgttatcatctttattcaaaactccgagcagcttcattgcctgatttccaggttcctgag
attaagaggattcctatagaggaattatgtcttcaggtcaagcttcttaaccctgattgc
aagatagaagaatttctgaagaagacacttgaccctccggtttacgagaccatacgtaat
gcaatcattgttctgcaagatattggggcattatcagttgatgagaaacttacagagctt
ggtgaaaggctagggtctttaccagttcatcctcttacaagcaagatgctgttaattgct
atattattgaactgccttgatccagcattgacgttggcctgtgcttctgactatagagat
ccatttaccctacctatgttgccaactgagaagaagagagcttcagctgcaagagccgag
ttagcctcatggtatggtggaagaagtgatcaattagcagttgtggctgcgtttgagggc
tggaaaagtgcgaaagaaagtggccaagagtcgaggttttgttctacgtactttatatcc
tcaagtactatgaacatgttatctggaatgcgtaaacaactgcaatctgaactcttgcgg
aatgggtttattccaggagatggatcttcctgtagccttaacgcacaggatccaggcata
ttacatgctgttcttgttgctggtttgtaccctatggttggaagactgcttccgcctctg
aaaggtgataggagggttgtcatagagactgcaggtggcgataaagttcgattgcaccct
cattctactaagtttaagctttcattcaaaaaattctttgatcgaccattaattgtatat
gatgagataacacgtggtgatggaggtcttcatataaggaactgtagtgtcattgggcca
ctcccacttttgttgctggcaacagagattgtagtggctcctggaaatgaagaagatgat
gatgatgacgacaatgatgatgatggaagtgattatgaagatgctgatgaggacgatggt
gaggaagataattttaaagcggatcaaggagagaaagttatgtcttctcctgaaaataca
gttaaggtcattgttgataggtggattcctttcaaggcgacagctcttgatgttgctcaa
atttactgcctgagagagcgattagctgcagcaattttattcaaggtttcacaccctgga
aaagttcttcctgagattcttgcagcctctgtatatgcaatggcttgcatcctctcgtac
aatgggatggcaggtatctcatcgctgctggagcctgtggactcgcttactacaatggtc
agtgctactgagattggtcagcctgatcgtgggagttataatggaatggatatgaatccc
aacaattctctcagttcacctatgtaccacggccagcatcagcgctcctatacacctcat
caaagaggcggcattcatatatcaaagggatcgttcatacatggaggaggagccatgaaa
agagatcatcctaaacggcagcgtggaaatggatcttga
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