Nicotiana tabacum (common tobacco): 107777140
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Entry
107777140 CDS
T04643
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nta03036
]
107777140
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107777140
microRNA pathway
RISC loading complex
107777140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
Cas3-like_C_2
Dicer_dsRBD
dsrm
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107777140
NCBI-ProteinID:
XP_016452613
UniProt:
A0A1S3YKP2
LinkDB
All DBs
Position
13:124414688..124427590
Genome browser
AA seq
1402 aa
AA seq
DB search
MDPTEVTVSENQQLCAVSLPFARSYQLEALETALKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSPYIAVFLVPTVVLVAQQGDALIMHTDLKVGKYWGEMGVDYWDAATWQQQVDNH
EVLVMTPAILLAALRHSFLKIEMIKVLIFDECHNARAKHPYACIMKEFYHRQLTLESAQL
PRILGMTASPIKTKGSSAEFTWKMIRDLENLMNSKVYTCVSESVLAEYIPFSTPKLKIYQ
HVDIPCTLFVSLVSDLIRLKDKYEDSISKSSLSDLSAGSAKKRLSKLYSSFVFCLSELGV
WPAFKAAEFLSSEESDFFSWGELDVCAQTIVRNFSLGASKVFSARIPSGSHWSLGGDIHA
NVDAGYLTSKINSLIESLLEYRDLKDLRCIIFVERIITAIVLRSLLNELLPELSGWKTEY
TAGHSSMLQSQSRNVQNKIVEEFRKGVVNIIVATSILEEGLDVQSCNLVIRFDPSATVCS
FIQSRGRARMQNSHFIMMVGSGDASTLTRMQNYMKSGEIMRQESLRNASIPCSPLDDELH
NEPCYKVETTGAVVTLSSSVSLLYFYCSRLPSDGYYKPSPRCVIEEETETCTLHLPKNCP
LQKVISVKGNTKILKQLACLEACKELHREGALTDNLVPDIVEEEAIIKELGCQIYTDEES
KYFPPELVSHCANDTEAVYYCYVVDLQHDSYSNYQLRGIILAVRTRLKLDDERLIFDLDV
DNGSLLVQVNYSGVVRLTSEEILRCQRFQVSLFRILLDRDLSKLQDALAAVQLPVGSAVS
DYLLLPSLGSTQNPQINWECVNSVLFPSQVLGDKHIDCCSTQGRKRSVNIKTGVVCSCML
ENSLVCTPHNGYVYCITGFLDNLDCNSLLEQRTGESITYKEYYKKRHGINLCFEGEPLLR
GKRLFKVHNYLQRCRSQKAKDSTDSSVELPPELCSIIMSPISISTLYTYSYVPSVMHRIE
SLVMASNLKRMHSDQCTQNIFIPTAKVLEAITTKKCVEKFHLESLETLGDSFLKYAASIQ
LFKTYENHHEGLLTVKKNKIISNAALCKLGCARKIPGFIRNEPFDLKGWLIPGDNSQVRN
FDEEVLMPSVKMYSRGRQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGIDIDFVA
APTLRHFPMNAEKLVNIRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGD
AVLDYAVTAHLYFKYPGLSPGLITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQM
VNTVLNFEKLDPVSTFGWESETTFPKVLGDVIESLAGAIFVDSGFNKDVVFQSIRTLLEP
LITPDTVKLHPIRELSELCDQKGYIKKKNVVSRENGVAYITVEVEADGVSHKFTCSERDK
KMAEKVACKNVLKLLKECASDA
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactgaagttacagtctctgaaaaccaacagctctgcgctgtctctctgcct
tttgcaagaagttatcagttagaggcattggagacggcattaaagcagaacactattgtt
tatttggagactggttcgggaaagacccttatcgctattatgcttctgagaagctatgct
taccttcttcgaaagccgtctccctacatagctgttttcttggtcccgactgttgttttg
gtggctcagcaaggagatgctctcattatgcatactgacttgaaagtgggcaagtattgg
ggagaaatgggtgtcgattattgggatgctgctacatggcaacaacaggtggacaatcat
gaggtgctggtaatgacacccgcaatactacttgctgctttgaggcatagcttcttaaaa
attgaaatgatcaaagttctaatatttgatgaatgtcacaatgcacgagccaaacaccct
tatgcctgcataatgaaggaattttatcatcgtcaattaaccctcgaaagtgcacaactt
ccgagaatattgggaatgactgcttcccctataaagactaaaggttctagcgcggaattt
acttggaaaatgattcgtgacctcgagaaccttatgaattccaaggtatacacgtgtgtc
agtgaatctgttttggccgagtatatcccattctcaactccaaagctgaagatatatcaa
catgtggatattccgtgcacattgtttgttagtttagtttctgacctgataaggttgaaa
gacaagtatgaagattcgatttcaaaatcgagcctatctgatttaagtgctggttctgca
aaaaaaagattgtcaaaactatattcgtccttcgtattttgtttgagtgagctgggtgtt
tggccggctttcaaggcagccgagttcttgtcctctgaagaaagcgacttcttttcatgg
ggagaattagatgtttgtgctcaaacgattgttagaaatttcagtttgggtgcatctaag
gtcttctcggctcgcataccatctggttctcattggtcacttggtggtgatattcatgca
aatgttgatgctggatatttgacatccaaaattaatagtcttatagagtctcttcttgag
tacagagacctgaaggatttgagatgcatcatatttgttgagagaatcattacagctatt
gttcttcggtctttgttaaatgagttgcttccggaattaagtggttggaaaaccgagtac
actgcaggacatagttctatgctgcagtcacagagcagaaatgttcaaaataaaattgtt
gaagaatttcgcaagggtgtggtcaacattattgtagcgacttctattcttgaagagggt
ttggatgttcaaagttgcaaccttgtcattcgatttgatccctcagcaaccgtttgtagc
tttatacagtctcgtggtcgagctcgaatgcagaactcacactttattatgatggttggg
agcggggatgcttcaactctcactcgcatgcaaaattatatgaaaagtggggagatcatg
cggcaagaatcattacgcaatgcttctattccgtgttcacctcttgatgatgaattgcac
aatgaaccttgctataaagttgaaacaactggagcagttgtcaccctcagttctagcgtg
tcattgttatacttctattgctcaaggctaccttcggatgggtactataaacccagtcct
aggtgtgttattgaggaggaaacagaaacctgcaccctacatcttcccaaaaattgccca
ctgcaaaaagttattagtgtgaaagggaataccaaaatattgaagcaacttgcttgcctt
gaagcttgtaaagaacttcatcgtgagggtgcattgaccgacaatcttgttcctgatatc
gtggaggaagaagccatcatcaaagaattgggatgtcaaatctatactgatgaagaatca
aagtactttccaccagaattggttagtcattgtgccaatgatacagaagcagtgtactac
tgctacgtagttgatttgcaacatgactcttacagcaattaccagcttcgtgggataata
cttgctgttaggacaaggctcaagttagacgatgaaagattgatttttgacttggatgtt
gataatggaagcttgctagttcaagtaaattatagtggagttgttaggcttacgtctgaa
gagattttacgatgtcagaggtttcaagtcagtctattcagaattcttcttgaccgcgat
ctgagtaagctgcaggacgctttggctgcagttcaactgcctgttggttctgcagtttct
gattatcttttgcttccatctttgggttcaactcaaaaccctcaaataaattgggaatgt
gtgaattctgtgctgtttccttctcaagttcttggggataagcatattgattgttgttct
acacaaggtcgcaaacgcagtgtgaacatcaaaactggggtggtatgcagctgcatgttg
gagaactcattggtctgtacgcctcataatggctatgtgtactgcattaccggttttttg
gataatttagattgcaactcattgctggaacagagaactggagaatccattacctacaaa
gaatactacaaaaagcggcatgggatcaacttatgctttgaaggagaaccacttcttagg
gggaaacgccttttcaaagtgcacaattaccttcaaagatgcagaagtcagaaggctaaa
gattcaactgattcatctgttgaattgccccctgaactttgttccatcatcatgtcacct
atctctatttctaccctttatacctattcatatgttccttcggtcatgcatcggattgag
tcattggttatggcctcaaacttgaaaaggatgcactcggatcagtgcacgcaaaacatt
tttattccaaccgctaaggttctggaggcaattactacaaagaaatgcgttgaaaagttt
catttggaatcacttgagacacttggagactcttttctcaaatatgctgcgagtatacag
ctgttcaagacttatgaaaatcatcacgagggtctactcactgttaagaaaaacaaaatt
atttccaatgctgcattgtgcaagcttggatgtgctcgtaaaataccgggatttattcgt
aatgagccattcgatcttaaaggatggctcattcctggtgataattctcaagttcgcaat
ttcgatgaagaagtgctgatgccttctgtaaaaatgtatagtaggggaaggcagaagatt
aaaagtaagagagtagctgatgttgttgaagcactgataggtgcctttctcagctcaggt
ggtgaagtagcggctttgtcatttatgaaatggcttgggatcgacattgattttgtagct
gcacctacgctgaggcacttccccatgaatgctgagaagctagttaatattcgatacttg
gaatcactgctagattacaagttccatgatccttctctgcttgttgaagctctaactcac
ggatcttacatgctacctgagattccacgatgctatcagcgcttggaatttcttggagat
gcagtgctagattatgctgtcacagcgcatctctatttcaaatatccgggactgtctcca
ggactcattactgatttgaggtctgcctccgtaaataatgaatgctacgctcaggctgct
gttaaggctggcctacacaagcacattcttcatgcttcacaagatctgcagagacagatg
gttaatactgttctgaattttgagaaattggatcccgtgtccacgttcggatgggagtcc
gaaactacttttccaaaggtgcttggagatgttattgagtctcttgccggggcaatcttt
gttgattctggcttcaacaaagatgttgtgtttcagagcatacgaacacttctggaaccg
ttgattacaccggatacagtaaagctccatccaatcagagagttaagtgaactatgtgac
cagaaaggttatataaagaagaagaacgttgtctctcgtgagaatggtgtggcgtatatt
acagtagaggttgaagcagatggtgttagtcacaagttcacgtgctcggaacgagacaaa
aaaatggccgagaaggtggcttgcaaaaatgtactcaaattgctgaaggaatgtgcatct
gatgcttag
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integrated database retrieval system
