Nicotiana tabacum (common tobacco): 107779209
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Entry
107779209 CDS
T04643
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107779209
09122 Translation
03013 Nucleocytoplasmic transport
107779209
03015 mRNA surveillance pathway
107779209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107779209
03041 Spliceosome [BR:
nta03041
]
107779209
03009 Ribosome biogenesis [BR:
nta03009
]
107779209
03012 Translation factors [BR:
nta03012
]
107779209
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107779209
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107779209
mRNA cycle factors
Stress granule specific factors
107779209
Spliceosome [BR:
nta03041
]
Complex C
Other components
EJC/TREX
107779209
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
90S particles
Helicases
107779209
Translation factors [BR:
nta03012
]
Eukaryotic type
Initiation factors
eIF-4
107779209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
107779209
NCBI-ProteinID:
XP_016455068
UniProt:
A0A1S3YSD8
LinkDB
All DBs
Position
Un
AA seq
409 aa
AA seq
DB search
MDGAATGSVIPANRRRPPMEEDRLVFETSKGVEPIASFAEMGIKDELLRGVYQYGFEKPS
AIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQT
EKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIK
LLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNF
TVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggatggggcggcgactggctctgttattccggcgaacaggaggcggccgccgatggag
gaagacagattagtcttcgagacatcaaagggcgtggagcccatagctagtttcgctgag
atgggcattaaagatgaacttcttagaggtgtttatcaatacggatttgaaaagccgtcc
gccattcaacaacgggctgtgctgcctattatatcgggtcgtgatgtcatcgctcaggcc
caatccggtaccggtaaaacctccatgattgcactcaccgtttgccaaattgtggatacc
aaatcttccgaggtacaagcattaattttgtcgcctacgcgggagctcgcagctcaaaca
gaaaaggtgattttggctattggagattacattaacgttcaggcacatgcatgtattgga
ggcaaaagcgtaggtgaagatatcagaaaactagagcatggagtacaagtagtctctgga
actcctggaagagtctgtgacatgattaaaaggagaactttacgaactaggggtataaaa
ttattgattcttgacgaatctgatgagatgttgagccgtggttttaaggatcagatatat
gatgtttacagatatcttccaccggagcttcaggttgtactgatttctgccactcttcca
aatgaaattctggagataacaagcaaatttatgacagatcctgttcggattcttgtaaaa
cgtgatgagttgactttagagggcatcaaacagttctttgtcgcggttgagaaagaagag
tggaaatttgatacactttgtgatctttatgatacactcaccatcacccaggctgttatt
ttctgcaacacaaaacgaaaggttgattggctgactagcaagatgcgtgaaaataatttt
acagtatcatctatgcatggagatatgccacagaaggagagagatgctattatggcagag
ttccgaggtggcacgactcgtgttctaatcaccacagatgtttgggcaaggggattggat
gttcaacaggtgtctctggtgattaattatgaccttccaaacaatagagagctgtacatt
catcgcattggtcgctctggtcgttttggtcgaaagggtgttgccataaattttgtgaag
agtgatgacattaaaattctgagagacatagagcagtactacagtacccagattgatgaa
atgcccatgaacgttgctgatttgatatga
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integrated database retrieval system
