Nicotiana tabacum (common tobacco): 107780004
Help
Entry
107780004 CDS
T04643
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107780004
09123 Folding, sorting and degradation
03018 RNA degradation
107780004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107780004
03041 Spliceosome [BR:
nta03041
]
107780004
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107780004
mRNA cycle factors
Stress granule specific factors
107780004
Spliceosome [BR:
nta03041
]
Complex C
Other components
Complex C specific factors
107780004
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_RdRP1_2
RRM_5
RRM_occluded
RRM_ACIN1
RRM_MUD2_C
RRM_MARF1
RRM_7
RRM_YTH1
SET_assoc
DUF848
Motif
Other DBs
NCBI-GeneID:
107780004
NCBI-ProteinID:
XP_016455998
UniProt:
A0A1S3YV27
LinkDB
All DBs
Position
16:complement(53974610..53979913)
Genome browser
AA seq
657 aa
AA seq
DB search
MAATAVPPPAVQTQAETTMVGPTPPPTPQVAIMGGGGNGSGGVGVTTSTNYALYVGDLDT
SVEEGQLYEVFNHVAQVVSIRVCRDQSGRSSLGYAYVNFTSPQDAATARELLNFTQLNGK
PMRIMFSHRDPSLRKSGYANVFIKNLDSSIDNKALYDTFAAFGTVLSCKVAADINGQSKG
YGFVQFDQDEAAHNAIKRLNGMLINDKQVYVGHFIRRQERSQANASDKFTNVYVKDLPET
TTDEDLKKLFEKYGTITSAVVMKDKNGKSKCFGFVNYESSDAAVSAVEQLNGSSLKEKVL
YVGKAQKKSEREAKLKAKFEQERASRFEKLKGANLYLKNLDSVSDENLKELFSEYGTITS
CKVMRDSKGVSKGSGFVAFSTPEEATRALNEMNGKLIGKKPLFVAVAQRKDERRASLQAH
FARMRPAGGMAPPPGAMSGFHNGAPRLAPQQVYFGQGAPGLIAPQAAEFGFQQQLMPGLR
PGVGPNFLLPYQLQRQGQHGRVGGRRGGNSQQQQQWNSGRFKPNGRNGMHPSITQGMMGP
IMPAPFDASAMTTSALDIQRTNPVPPSTLASSLAFASPEDQHRMLGEQLFPLVERIERDH
AGKVTGMLLEMDQTEVLHLIESPDALNKKVSEAMDVLRLAGPGSSVGDKFGSLTLNG
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggcggttccgccaccggcggtgcaaactcaggcggaaacgacgatggtc
ggaccgacgccaccgccgactccgcaggtggcaataatgggaggtggtggtaacggtagt
ggtggtgttggtgtgacgacgagtacgaactatgccctgtacgtaggggatctggacacg
tcagtggaagaaggacaactgtatgaggtgtttaaccatgtggcacaagtcgtgtccatt
agggtttgcagggatcaatcgggccggtcctccctcggttacgcttatgtcaatttcact
tctccacaagatgctgctactgctagggagttattgaattttactcagttgaatggaaaa
cctatgaggataatgttttctcatagagatcctagtctgcggaagagcggatatgcaaat
gttttcattaagaatctggactcgtcaattgataacaaggcattgtatgacacttttgct
gcctttggaacggttctttcctgcaaggtagctgctgatattaatggtcagtcaaaagga
tatggatttgtacaatttgatcaggacgaagctgcacacaatgcaatcaagcgtctgaat
ggtatgttgataaatgataaacaagtctatgttggccacttcatccgtcgacaagaaagg
agtcaagcaaatgcctctgacaaattcacaaatgtgtatgtgaaagaccttcctgaaact
accactgatgaggatcttaagaagctttttgagaagtatggaaccatcaccagtgcagta
gttatgaaagacaaaaatggaaagtccaagtgttttggcttcgtcaattatgagagctcg
gatgctgcagtctctgctgttgaacagttgaatggcagttccttgaaagaaaaagttctg
tatgtaggcaaggcccagaagaaatcagaacgggaagcaaaactgaaagccaaattcgaa
caagaaagagctagtcgatttgagaaactaaaaggtgctaacttatatttgaaaaatctc
gacagtgtgagtgatgaaaatctgaaagagttattctcggagtacggaaccataacgtcc
tgcaaggtgatgcgcgactcaaaaggggtgagcaagggttctggctttgttgccttctcc
acccccgaggaagctacacgagctttgaacgaaatgaatggcaagttgataggaaagaaa
cctttatttgttgctgttgcccagcgcaaggatgaaagaagagcatcgctacaggcacat
tttgctcggatgcgaccagctggggggatggctcctcctcctggagctatgtctgggttt
cacaatggggcacctcgactagctcctcagcaggtctactttggtcaaggtgccccagga
cttatagcacctcaagccgctgaatttggcttccagcaacaactcatgcctggacttcgt
ccaggtgttggcccgaatttcctcttgccctatcagcttcagcgccaaggacaacacgga
cgtgttggtggaaggagaggagggaattctcaacagcagcagcagtggaactctggtaga
ttcaaacccaatggacgaaatggcatgcatcctagcatcactcaaggtatgatgggacca
attatgccagcgccatttgatgcttctgctatgacaacatctgcgttggacatccaacgc
actaacccagtgccaccatcaacacttgcttcttctttggcctttgcttctccagaagat
cagcatcggatgcttggagagcagttatttccacttgtggaacgcattgaacgtgatcat
gctggtaaagttactgggatgttgcttgagatggatcaaactgaagtgcttcatctcatc
gagtcccctgatgctctcaataagaaagtttccgaggctatggatgtccttcgcttagca
gggccaggttctagtgttggtgataaatttggatctctcaccctgaatggatga
DBGET
integrated database retrieval system
