Nicotiana tabacum (common tobacco): 107780950
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Entry
107780950 CDS
T04643
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107780950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107780950
03009 Ribosome biogenesis [BR:
nta03009
]
107780950
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107780950
Spliceosome [BR:
nta03041
]
Complex A
U2 snRNP components
U2 related factors
107780950
Complex B
107780950
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107780950
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
90S particles
Helicases
107780950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_30
T2SSE
Flavi_DEAD
FtsK_SpoIIIE
AAA_7
PhoH
UvrD-helicase
SLFN-g3_helicase
AAA_29
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
107780950
NCBI-ProteinID:
XP_016457062
UniProt:
A0A1S3YYZ2
LinkDB
All DBs
Position
Un
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETPAKKVNVGSVNGSMTPSINKWNGKPYSQRFYEILEKRKTLPV
WHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVAIGEEVGYSIRFEDCSSTKTVLKYLTDGMLLREAMADPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRL
HPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKEVSNLG
DQVGPVKVVPLYSTLPPAMQQKIFDSAPPSVVEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDLQP
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
RLGEIMSEFPLDPQMAKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKNR
FGHIDGDHLTLLNVYHAYKQNTEDPQWCYENFINQRALKSADNVRQQLSRIMARFNLKLC
STDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDESKS
KR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagcggaagaggaaagtaagcttgtttgatgtggtggatgagacgccagct
aagaaagtgaatgttggaagcgtaaacggtagcatgacgccgtcgattaataagtggaac
gggaagccttactcacagagattctatgagatattggagaaaaggaagactcttccggtt
tggcatcaaaaggaggagtttttacaggctttaaaatctaatcaaaccctaattttggtt
ggtgaaaccggtagtggtaaaaccactcagattccgcagtttgttttagatgctgttgaa
gttgagacggcggataagcgcaggaagtatatgattggttgcactcaacctcggagggtg
gctgcaatgtctgtgtctcgtcgagttgctgaggagatggatgttgcaattggggaagaa
gttggatatagcatccgttttgaagactgcagtagtactaaaactgttttaaaatactta
acagatggtatgcttttaagggaagcaatggcagatcctctattggaacgctacaaagta
attattctggatgaagcccatgaaagaactttggcaacagatgtcctgtttgggcttctt
aaggaggtgttgaaaaatagaccagacctaaagcttgttgttatgagtgccacacttgaa
gcagagaagtttcagggttacttctttggtgcgcccctcatgaaagtgcctggaaggctt
catcctgtggaaattttctacactcaggagcctgagagagattatctcgaggctgccatt
cggactgtggtgcagatacacacatgtgaacctcctggtgacatacttgttttccttact
ggagaagaggagattgaagatgcttgtcgcaaaatcaataaggaggttagtaatttgggt
gatcaagtgggccctgttaaagtggtgcctctttattctacacttcccccagctatgcag
caaaagatatttgattcagccccaccctcggtggtggagggtggtcctgctggcaggaag
attgttgtgtcaaccaacattgcagagacatctttgacaattgatggcattgtatatgtc
atagatccgggatttgctaaacaaaaagtttataaccctagggtgcgtgttgaatctttg
ttggtgtctcctatttcgaaggccagtgcccaccagagatcaggacgtgctggaagaacg
cagccagggaaatgctttagactttacacagagaaaagtttccataacgaccttcaacca
cagacctatccagaaatacttcggtcaaatttggctaatacagttctaactttgaagaag
ttaggtattgacgacctggttcattttgattttatggatcctcctgctccagagacgttg
atgagagcactggaggttttgaattacttgggagcattggatgatgaggggaacttgact
aggttgggtgagattatgagtgaatttcctcttgatcctcagatggcaaaaatgcttgtt
gtcagctcagaattcaactgctccaatgaaatcctctcaatatccgccatgctatcagta
cccaattgctttgtccggcctagggaggctcagaaagctgcagatgaagcaaagaatcgg
ttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcatgcctacaagcag
aacacggaagatcctcaatggtgctacgagaatttcatcaatcagagggctctcaaatca
gccgacaatgtgaggcaacagctttctcgcataatggccaggttcaacctcaagttatgc
agcacagacttcaacagtcgcgactactacgtaaacataagaaaggctatgttagctgga
tatttcatgcaggttgctcacctagagcgtactgggcactatctgactgttaaagacaat
caagtggttcacttgcatccttcaaattgcctggatcataagccagaatgggttatctat
aatgaatatgtcttgacaagcaggaatttcatccgtactgtgactgatattcgtggtgaa
tggttggttgatatcgcaccacattactatgaccttgcgaactttccgcaatgtgaggca
aaacgagttcttgagcggttatacaagaagcgagagcgagaaaaagacgaaagcaaaagc
aaaagatga
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