Nicotiana tabacum (common tobacco): 107782724
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Entry
107782724 CDS
T04643
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nta03036
]
107782724
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Meiosis-specific proteins
Others
107782724
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_ATPase
SHOC1_HhH_tandem
ZIP2_M
Motif
Other DBs
NCBI-GeneID:
107782724
NCBI-ProteinID:
XP_075108077
UniProt:
A0AC58UF16
LinkDB
All DBs
Position
4:67176196..67187594
Genome browser
AA seq
1628 aa
AA seq
DB search
MRTRFLCTDYFNSTPISARDFLRLPLSPHLTDPNTSKFEDINFSDGVSTLSIDVEIEKFP
IETALSSFFADVLPHNIDVELSEFADPQPFASCSSEVQTSKTTNSEGTIVSYSKGKDNLE
MVQLEIRVLDTSWLPLLEDIPYFGKENLSIPSHSDGENKLDMPGLEVWLPDSPEILQSIC
SVDDISSVAVLEKSADLMEDGAFCQGQYHSSTDVFPHLEVDEAGLVIVSDNSVKEKVLSI
ENIELHCETPGSEGMGSSNELLGSTKFDTFQHLSDGSFAMGCCEVEVPCLNFSAEMDLIS
IIELEKNSVIHESIENDGLIWVASPIIFDELQFFDSDLFSLREFQSEAKVDIDKDTCDLM
LREAENFRNFDELLVSHELIPVDNSFRSLPVPPVPENGNIKSLYLCIKEILAELEPQSPS
MSDGLYLDWHFLEEEKCEYREDCFNLLRDIDANDIAFCLNFSDNEMLVSDYFFSSDSPQE
PNRAESKEMLSLPSNGIPISPIPYSIEVSTKLLNDGKFPTEGVSSQCIARKASSFGDSRS
KFNDLDFFLNRKEYSRGKDYKPADSSIDTSAMDQISFLSSSATTLLQPQWNIKVHQILLS
TDILLLIDDLKKIFLAIFERQRELIEIQDPSQAVDDDAILRLPKKKLINLIKKRGICRSS
LFQDGDKTMSLVTLSAIKQMVWYLCYYDLHTTYLYIEKLSRSLQGLESKLDFIYNIVKDV
HQKGENDIHKFHPSLSVIKDILETFKSKDSSKILIVAEPVFWWSLKKLLTSMNIAFFQQQ
NGQKDDFYKLEDASMQMIHESDCCLVTREHLFASFPFEKFEIILEYGGSQESSKVSSILP
KSDRVPPLHFLKVELEDPSVAKALCDGVDMPNINEASVARGPHSCSTLNEIDVTFEELLN
YLPVEKNLKGGSMEALLGNEACSTAAEDAVFSSKSEQNRRSIDGCPETIIIVNTHNFDTE
MVISRRSTYQKILAFEKKGVQVIERDLRQPVDIIVSASACLAWYDCKNIAKKATASEEAF
SCLPQCVENIAANILTSLSFAFSGCILVFEGESHFIAGIMESSDELYAAAASLGMDIRIF
YSYSSEMTDEIILSCIELSLMTSRGLYPKMRETQTLAESFLSAFPSINPLSAHAILSSAG
LLVEFLEWTHERRIHAVQKYQVPDESITLLSALSRFGEREDSKSGMTDCSSSVSSAPGSE
SLHFKSNSVGTKRKTTWNIENLNTPTNELFDFDPPRTFSKARLNHPRASGLCDSRISEDT
NFFDEFGNSSLSFDTELCVQRQSLDTNGTEDLFKVTELCDYQMRKDPHMGDELNKLEAPQ
IDVCLRPRERVYVGMMNKLDRKNNYSGNFKEDITDEVIDIDDTPATRKAFRNAKYKSFST
LELAMERSKTGVPKAAKKLFFGASGLQEFPTTGDIDSSPDACTSVRDLGQGSGQGMGQHL
NAGFYHKKSQIKHKKGVTEEGVSEKVKCLSDLTMQDNNTACYGETPLSSARQSTRLQQGS
PWTIEFLNKMREKSRSRQQFLPRDLSAPWYGYPGKSSEVTNRKSPSTIEFYKYQGNSCQE
AGTGRKRPKKCIQLPASTTEKASDRLIPTWTPDDKRAKRVLSFATNGNGGQTNLIWSDKN
SHTLGRRY
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctctgcacagattacttcaattccactccaatttcagctcgcgat
ttcctccgcctccctctttcgcctcatctcactgacccgaacacctctaaatttgaagac
attaatttttctgacggagtttctactcttagtatcgatgtcgaaatcgagaaatttccg
atcgagacagctctctccagcttcttcgccgatgtccttccgcacaacattgatgttgaa
ctctccgagttcgcagatcctcagcctttcgctagttgcagttccgaggtgcaaacaagc
aaaactacgaactcagaggggactattgtttcctacagcaaggggaaggacaatcttgaa
atggtccaacttgaaattcgggtgctggatacatcctggcttccattgctagaagacatc
ccttattttggaaaggagaacttgtcgattccctctcattcggatggtgaaaataagctg
gatatgcccggtcttgaagtttggctgccagattcccctgagatcctgcaatcaatttgt
tcagtggatgacatctcttctgtggctgtactggagaaaagtgctgatttgatggaagat
ggtgctttctgtcaggggcaatatcattctagtacagatgtctttcctcatcttgaagtg
gatgaggcaggtttggttattgtcagtgacaactctgtaaaggagaaagttctaagcatt
gaaaatattgagcttcactgtgagacgccaggaagtgaaggaatgggtagcagcaatgag
cttttgggttccacaaagtttgacacattccaacacctatcagatggtagtttcgcaatg
ggctgttgtgaagttgaggttccgtgcttgaatttctctgcggagatggatttgataagt
attattgaacttgagaaaaactcggtgatccatgaaagcatagaaaatgatggtctaata
tgggtagcaagcccaatcatttttgatgaattgcagttctttgattcagaccttttttct
ttacgtgaattccagtctgaagcaaaagtagatattgataaagatacatgtgacctaatg
ttgagagaagccgagaatttcaggaactttgatgaattgcttgtttcccatgagctcatc
cctgtggataattctttcagatcattgcctgtgccaccagttcctgagaatggaaatata
aagtcactgtacttgtgtattaaggaaatcctagctgagttggagccgcagtctccctcc
atgtccgatgggttatacttagattggcattttctggaagaagagaaatgcgagtatcga
gaagactgtttcaatttgttgagggatatagatgctaacgacattgccttttgcttgaac
ttcagtgacaatgagatgcttgtatcggactattttttctcaagtgatagtccacaagaa
ccaaacagagcggagagcaaggaaatgctgagtttaccttctaatggcattcctatatct
cccatcccttatagcatagaagtgtcaactaagttgctgaatgatgggaagttcccaact
gaaggagtatcatcccaatgtattgctagaaaagcatcttcatttggtgactccaggtca
aagtttaatgatcttgattttttcttaaatcgtaaggagtatagtagaggcaaagattat
aaaccagctgacagttcaattgatactagtgccatggaccagatcagcttcctctcttct
tctgcaaccacattattgcaacctcaatggaatatcaaggtgcatcaaatattgttatct
actgatattctacttctaattgatgatcttaagaagatctttctagctatctttgaaaga
cagagagagttgattgagattcaggatccatctcaagctgtggacgatgatgctattctt
cgccttccaaagaaaaagctcatcaatttaattaagaaaagaggcatatgcaggtcatct
ttgttccaggatggtgataaaacgatgtcattggtcacattgtctgcaatcaaacagatg
gtttggtacctgtgctactatgatctgcatacaacctatctatacatagaaaagttatcc
aggagcttgcagggattggaatctaaacttgatttcatctacaacatcgtaaaagatgtg
catcaaaagggtgaaaacgatatacataagttccatccatcgctatccgttatcaaggat
atactggagacatttaagagcaaggatagttcaaagatattaattgtggctgagccagtg
ttctggtggtcattgaagaaactattgacgtccatgaatattgcattttttcaacaacag
aatggacagaaggatgatttttacaaattagaagatgctagcatgcaaatgattcacgaa
tcagattgctgtttagtaacccgtgagcatctgtttgcctcatttccatttgagaaattt
gagattatcttggaatatggaggttcacaagaatcatctaaagtatcttccatcttgcca
aagtcagatagagttcctccccttcatttccttaaggtggagctggaggaccccagtgtt
gcaaaagctctttgtgatggtgttgacatgcccaacattaatgaagctagtgtggcaaga
ggtcctcactcttgctctactctcaatgagattgacgttacctttgaagaactgctaaat
tatcttccagtggaaaagaacttgaagggtgggagcatggaggcattactgggaaatgaa
gcttgctctactgcagctgaagatgcagtattcagttcaaaatctgagcaaaatcgcaga
agcatagatggctgtcctgagactatcattatagttaacacacacaattttgacacggaa
atggtaatttcaaggagaagtacataccaaaagattcttgcatttgagaagaaaggagtt
caggtcatagagcgtgatttacgtcagcctgtcgatattatagttagtgcatccgcttgc
cttgcttggtatgactgcaaaaacattgcaaagaaagctactgcctccgaagaggctttc
tcttgcttgcctcaatgtgtcgagaatattgcagcaaatattttgacgtcactcagtttt
gctttcagtggctgcattctggtctttgagggagaaagccactttatagcaggaattatg
gagtcatctgatgagctctatgctgctgctgctagcttgggcatggatatacggatcttt
tattcatattcttctgagatgactgatgagatcatattatcgtgcattgaactttcattg
atgacaagcagaggactttatcctaagatgcgtgagacacaaacgctggcagaatcattc
ctttctgcatttccttcaatcaatcctctctcagcacatgcaatattgtcttcagcgggc
ttgcttgttgagtttctggaatggacacatgaacgcagaattcatgcagtccagaagtat
caggttcctgatgaaagcatcacattactaagtgctttgagcagatttggggagcgggag
gattctaaatcgggaatgacagattgctcctcttcagtttcttctgctccaggctctgaa
agtcttcattttaaaagcaactctgtggggacgaaaagaaaaaccacctggaatattgaa
aatcttaatacgcctacaaatgagttgtttgattttgatccaccacgaacattttctaaa
gccagactgaatcatcccagagcatctggcctgtgcgattctcggatttcagaagatacc
aacttttttgatgaatttgggaattctagcttatcatttgacacagaattgtgtgttcaa
agacagtcattagacaccaatgggacagaagatctttttaaggtaactgagctctgcgat
tatcagatgagaaaagatccacatatgggagatgagttaaataaacttgaggctccacaa
attgatgtgtgtttgcgtccaagagagagagtttacgtgggtatgatgaacaaattggac
agaaaaaataactattcaggaaattttaaagaggatatcacagatgaggttattgatatt
gatgatactcctgcaactagaaaagcttttcgtaatgcaaaatacaagtccttttctacc
ctggagcttgcaatggaaaggtccaaaacaggggttcctaaagctgctaaaaaactcttt
tttggagcaagtggtctccaagaattcccaaccactggggatattgactctagcccagat
gcctgcacttctgtgagagaccttgggcaaggatcagggcaaggaatgggacagcattta
aatgcaggtttctatcataagaagagtcaaattaagcacaagaaaggtgtcacagaagag
ggtgtatctgagaaagtaaaatgtttaagtgacctgacaatgcaagacaataatacagct
tgttatggcgagacaccactctcaagcgcacgtcaatccactcgattgcagcaaggttca
ccctggacaattgaatttctgaacaaaatgagggaaaagagtcggtcacgtcagcagttt
ctcccacgtgacctatcagccccttggtatggataccccggcaaatcatcagaagtcaca
aatagaaagagtccatctactattgaattttacaagtatcaaggaaacagttgccaagag
gcagggaccgggagaaagaggcctaagaaatgcatccagctaccagcatccactactgag
aaggcttcagatcgtcttattccaacgtggacacccgatgataagagggcaaaacgggtg
ctatcatttgcaacaaatggaaatggagggcaaactaacctgatatggagtgataagaac
tctcatacattgggtagacgatattaa
DBGET
integrated database retrieval system
