KEGG   Nicotiana tabacum (common tobacco): 107782860
Entry
107782860         CDS       T04643                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107782860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107782860
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107782860
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107782860
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 107782860
NCBI-ProteinID: XP_016459285
UniProt: A0A1S3Z499
LinkDB
Position
Un
AA seq 128 aa
MSWASPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYIIRGENVVLIGELDIDKEELPPHMTRVSEAEIRRAQKAERDATDLKGTMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaagtccagaagatatctatctctctacttctcttgcaagctatcttgac
aagaaacttcttgtactgctgcgagatgggcggaagcttttaggaacacttcgttctttt
gaccaatttgctaatgctgttcttgaaggtgcatgtgaccgtgttattgttggtgatcta
tattgtgatatcccattaggactttatattatacgtggggaaaatgtcgtgttaattggt
gaactggacatagataaggaggaacttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcgcagaaagcagaaagggatgctacagatcttaaaggcacaatgagaaag
aggatggaattccttgatatggattga

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