Nicotiana tabacum (common tobacco): 107782860
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Entry
107782860 CDS
T04643
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107782860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107782860
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107782860
mRNA degradation factors
5'-3' decay
Lsm complex
107782860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107782860
NCBI-ProteinID:
XP_016459285
UniProt:
A0A1S3Z499
LinkDB
All DBs
Position
Un
AA seq
128 aa
AA seq
DB search
MSWASPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACDRVIVGDL
YCDIPLGLYIIRGENVVLIGELDIDKEELPPHMTRVSEAEIRRAQKAERDATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaagtccagaagatatctatctctctacttctcttgcaagctatcttgac
aagaaacttcttgtactgctgcgagatgggcggaagcttttaggaacacttcgttctttt
gaccaatttgctaatgctgttcttgaaggtgcatgtgaccgtgttattgttggtgatcta
tattgtgatatcccattaggactttatattatacgtggggaaaatgtcgtgttaattggt
gaactggacatagataaggaggaacttcctccccatatgacacgtgtttcagaagctgag
ataagaagggcgcagaaagcagaaagggatgctacagatcttaaaggcacaatgagaaag
aggatggaattccttgatatggattga
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