Nicotiana tabacum (common tobacco): 107787003
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Entry
107787003 CDS
T04643
Name
(RefSeq) flowering time control protein FY isoform X3
KO
K15542
polyadenylation factor subunit 2
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107787003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107787003
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107787003
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Vps41
WD40_like
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_VPS8
WD_LRWD1
Pep3_Vps18
WDR54
Beta-prop_NUP159_NUP214
B-prop_COPA_B_2nd
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
107787003
NCBI-ProteinID:
XP_016464003
UniProt:
A0A1S3ZI13
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Position
23:complement(91898666..91917387)
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AA seq
740 aa
AA seq
DB search
MMTSGDPHQHQHQQHQPMPPQQFQHQHQQQHPPHFGEFPRGPQPPPGPPPMMRQPSASST
TLNAQPPGPTPHPSYDAHADSFAAKRMRKIGQRRAVDYTSTVVRYMQIRMWQRDSRDRTV
LQPSPAAAVDVLPAVAYLDNPSTSFAAKFVHTSLNKNRCSINCVAWTPSGRRLITGSHSG
EFTLWNGQSFNFEMILQAHDQAVRSMIWSHNDNWMVTGDDGGTIKYWQTNMNNVKANKNA
HKESVRGLSFCSTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLV
SGGKDNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE
LESFRGHQKDVTSLAWHPFHEEYFVSGSFDGSIFHWLVGHEAPQVEITNAHETGVWDLAW
HPIGYLLCSGSNDQTTKFWCRNRPGDPARDKFNLGQQGLGDQNNVLGRMPGNFPGPEPPS
TPGAFASGLLRTEGTIPGVGAALPLSLDSSQGEQKSSMPVSMPIGAPPLPPGPHPSLLAG
NQQQAYQQNMQQAQHQQSLPQQMTSHPLQPSNLPQLQPPHMPLMPHPHLPRPPHQLQQVN
MPGLPSSMPGSGPIQAMPIPGPMGIQGNMNQMVPPMPQGHFVGMPSGSGPQGNVPPGGMP
NGLPNMQGPQNPGGNQMFPPGRGFNRQQAGQMPLMPGHNPYQQSGNPNTPGMHMQSNFGL
QSGMPPPLPPGPPPHNQGHQ
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgagtggtgatcctcatcaacatcagcatcagcagcaccagccgatgccaccg
caacaattccagcaccaacaccagcaacaacatcctccacattttggagagtttccaagg
ggtcctcaacctccaccaggtccacctcccatgatgcggcagccatctgcatcctccact
actcttaatgctcagccacctggacctactcctcatccttcttatgatgctcatgctgac
agttttgctgcaaagagaatgagaaaaattggtcaaagaagagcagttgattacactagt
acagttgtaagatatatgcagatccgcatgtggcagcgcgactcgagggataggacagtg
ttacaacctagtccagcagcagctgttgatgtattgccagcagttgcctatttggataat
ccctccacaagttttgctgctaaatttgttcatacatctctaaataaaaaccgttgttca
atcaattgtgttgcgtggactcctagtgggcggcgcctcattactggatctcatagtggt
gaattcacactctggaatgggcagtcgtttaactttgaaatgatacttcaggctcatgat
caagcagttaggtcaatgatatggagccacaatgataactggatggtcaccggtgatgat
gggggcacaataaagtattggcaaaccaatatgaataacgtcaaagccaataagaatgca
cataaagaatcagtacggggattaagcttctgtagtacagatttaaaattttgctcctgt
tctgatgacacaactgttaaagtatgggactttgcaaggtgccaagaagagcgctcatta
tctggccatggttgggatgtgaagagtgttgattggcaccctacaaagtctctattagtc
tcaggtggaaaagataatcttgttaaactttgggatgccaagtcagggaaggagctttcc
tcatttcacgggcataagaatactgttctctgtgtaaagtggaatcaaaatggtaactgg
gtccttactgcttccaaagatcaaattatcaagctttatgacataagggctatgaaggag
cttgaatcattccggggacatcagaaggatgtgacatcattggcctggcatccgtttcat
gaagagtatttcgttagcggaagctttgatggttcaatatttcattggcttgtggggcat
gaagctcctcaagttgaaattacaaatgcacatgaaactggtgtttgggatcttgcatgg
caccccattggctatctcctttgcagtggcagcaatgatcagacaacaaagttttggtgc
agaaataggcctggggatccagctcgtgataaattcaatttgggacagcaaggtttgggt
gatcaaaacaatgttcttggtcgcatgcctggtaattttccaggtcctgagcccccatca
actcctggagcatttgcctctggcttgttacgaactgagggtacaatacctggagttgga
gctgcattgccactatcgcttgattcatctcaaggagaacagaagtcttccatgccagtt
tcaatgcctataggagctccccctcttcctcctggtccacatccatctcttcttgcgggt
aatcagcagcaagcatatcaacaaaacatgcagcaagctcagcaccagcagtcactacct
caacaaatgacttctcatcctttgcaaccatcgaatttgccacagctacagcctccacat
atgcctctaatgccacatcctcatttgcctcggccaccacaccaactacaacaagtaaac
atgcctggccttccgtcttcaatgccaggttctggacccatccaagcaatgcctatccct
ggtccaatggggatacaaggtaacatgaatcagatggttcctccgatgcctcaaggtcat
tttgtgggcatgccttctggatctggaccacagggcaatgttcctccaggtggaatgcca
aatggactgccaaacatgcaaggccctcaaaacccaggaggtaatcagatgtttccacca
ggacgaggcttcaacaggcaacaagctggacaaatgccgctcatgcctggacataatcct
tatcagcaatctggaaatccaaatacacctggaatgcacatgcagtcaaacttcggtctt
caatctggaatgcctccgccattgccaccggggccgcctccacataatcaaggacatcaa
tag
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