Nicotiana tabacum (common tobacco): 107787244
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Entry
107787244 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107787244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107787244
03012 Translation factors [BR:
nta03012
]
107787244
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107787244
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107787244
Translation factors [BR:
nta03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107787244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
SR-25
nSTAND3
NACHT
AAA_19
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
107787244
NCBI-ProteinID:
XP_016464273
UniProt:
A0A1S3ZIW7
LinkDB
All DBs
Position
Un
AA seq
1117 aa
AA seq
DB search
MRFADLACHAIWLVPIEREKIRRFIDSLNYGLRYSMAREVTTDTRSDKAVEIARSFDWPQ
FLHNALPAKSSYRAPSAQGSASELSAYDVSTSNYTTRIASSGGAHLARGRPRWGSHSDGG
QSRFYAFLARLEAVASDAMITAPRSYVPSXGRGGGGRGGEQRWWDPVWRAERLRQQAAQM
EVMNENEWWGKMEQFKRGGEQELVIRRNFSRDDQQKLADMAYQLELYFHAYNKGKALVAS
KVPLPSYRVDLDERHGSTQKEIRMSTEIEERVGNLLSSSQDTVSGGTSSSTSGSSAKLSS
KALETARPKLTVENDTAKQRLNNELKQKQEKTRESEKVKAMISFREELPAFKVKYEFLEA
VASNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICAQPRRISAISVAARICSE
RGENLADTVGYQIRLESKRSAQTRLLFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMN
EDFLLIILRDLLPRRPDLRLILMSATINAELFSKYFRNAPKIHIPGLTYPVAELFLEDVL
EKTRYLIKSEADSFQGSSRRRQRQQDSKRDPLTELFEDVDIGYHFKGYSMTTRQSLEAWS
GSLLDLGLVEATIEYICRREGEGAILVFLTGWDDISKLLDKIKANNFLGDTRKFLILPLH
GSMATINQREIFDRPSANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLAC
LLPSWISQASAHQRRGRAGRVQPGVCYRLYPKLIYDAMPQYQLPEILRTPLQELCLQIKS
LQFGAIESFLAKALQPPDPLSVHNAIELLKTIGALDDTEELTHLGRHLCTLPVDPNIGKM
LLMGSIFQCLNPALTIAAALAHRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEG
WKDAKHYRKERAFCWENFLSPVTLQMLEDMRNQFVDLLSDIGFVDKSRGAKAYNEYSNDL
EMVCAILCAGLYPNVVQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYLVYSEKV
KTTSIYIRDSTNISDYALLMFGGNLSPSKSGEGIEMLGGYLHFSASKSVLDLIKKLRGEL
DKILKRKIEEPGFDISVEGKGVVGAVVELLHSQDIRY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgcagatttggcatgtcatgctatatggttggtacccattgagagggaaaag
atcaggaggttcattgatagccttaactatggtttacgttatagtatggctcgagaggtt
acgacggatactaggtctgacaaggcagtcgagattgctagatcttttgattggccacaa
ttcctacacaatgcgctgccagcaaagagttcttaccgtgctccatctgctcagggttcc
gcatcagagctctcagcatatgatgtcagcaccagcaactacaccacccgcatagccagc
tcgggtggggctcacttagcacgaggtcgccctagatggggaagtcattcagacggtggt
cagtcccgtttctatgcatttcttgctaggctagaggcagttgcttcggacgctatgatt
acagccccaaggagttacgttccctcacntggtcgtggaggaggaggacgcggtggtgaa
cagagatggtgggaccctgtttggcgtgccgaacgccttcggcaacaagccgctcagatg
gaggtgatgaatgaaaatgagtggtgggggaagatggagcagtttaagagaggaggcgag
caggaattggtaataaggcggaattttagtagggatgaccagcagaagttggctgatatg
gcgtatcaattagagctttacttccatgcttataacaaaggaaaggcacttgttgcaagc
aaagtcccattgccaagctatcgtgttgaccttgacgagcgtcatggatctacacagaaa
gagataaggatgtctacggagattgaggaaagagtcggaaatctattgagtagttcacaa
gatactgtatctggtgggacttcctcttcaacatctggtagttctgccaaattatcatcc
aaagctctagaaacagcaagacctaagttgactgtagagaatgatactgccaagcagaga
cttaataatgaacttaaacagaaacaggaaaagacaagggaaagtgaaaaagtcaaggca
atgatctcattcagggaagaacttccagcatttaaagtaaaatatgaatttttggaagct
gttgcaagtaatcaggttttggtagtttctggagaaactggttgtggcaaaaccactcag
ctccctcaattcattctagaagaggagatatcatccctccgtggtgctgactgtaacatt
atatgcgctcagcctcgccgtatatctgccatatcagttgcagctagaatatgctctgaa
agaggagagaatcttgctgatactgttggttaccagatccgactggagtcaaagcgctct
gctcaaacgcggttgctattctgcacaacaggagtgttactgcggcagctggttcaggac
cctgatttgactggtgttagccatctgcttgttgatgaaatccatgaaagaggcatgaat
gaagactttctcttaataattttacgtgacctccttcctcgacgacctgatttgcgtctc
attctgatgagtgctactattaacgctgagttgttctccaaatacttcagaaatgcaccc
aaaattcatataccgggcttgacatatccagtggcagagctgtttcttgaagacgtgtta
gagaagactcgttaccttataaaatccgaagcagacagtttccagggaagctcaaggaga
aggcagaggcaacaagattctaaaagagatcctctgactgagcttttcgaggatgtggac
attggttaccattttaaaggctacagcatgactacaaggcaatctcttgaagcatggtct
ggttcactgcttgatttgggtcttgtggaagcaacgattgagtatatttgtcgtcgtgaa
ggtgaaggtgcaattcttgtgttcctgactggttgggatgacatttctaagctgcttgat
aaaattaaggctaacaactttcttggagacaccaggaagtttttgatcctccctcttcat
ggttcaatggcaacaataaatcagcgagaaatatttgatcgcccatctgctaacatgagg
aaaattgtgcttgcaaccaacatagctgagagcagtataactatagatgatgtcgtgtac
gtcatagactgtggaaaggcgaaagagactagttacgatgctcttaacaagctagcttgt
ttattaccatcatggatttcacaggcctcggcacatcagagacgtggtcgtgcagggcgt
gtgcaacctggagtttgttataggttgtatccgaaactaatatatgatgcaatgcctcaa
tatcaactacctgagattcttcgaacaccattacaggagctttgtctccaaattaagagc
ttgcagtttggcgctattgaatcctttctggccaaggcacttcaacctccagatcctctc
tctgtccacaatgccattgaacttctcaaaactattggagctctggatgatacagaagag
cttactcatcttggccgccatctttgcactctacctgtggacccaaatattggaaagatg
cttctgatggggtccatcttccaatgtctaaaccctgcactgactattgctgctgctctt
gcgcaccgtgatccttttgtccttccaataaacaggaaagaggaagcagatgctgccaaa
agatcatttgctggtgattcttgcagtgaccatattgcacttcttaaagcatttgaagga
tggaaagatgctaaacattatagaaaagaaagagcattctgttgggaaaatttcttgtct
cctgtaacgttgcagatgttggaagacatgagaaatcagtttgtagacctactgtcagat
atcggttttgtggataaatcacgaggagctaaggcatacaatgagtatagcaacgattta
gagatggtatgcgctatcctttgtgcgggtctctacccaaatgttgtgcagtgtaaaaga
agaggaaagcgtactgcattttacacgaaagaagttggaaaagttgatattcaccctgca
tctgttaatgctggtgttcatcttttccctcttccatacttggtttacagtgagaaagtc
aagactacaagcatttatatcagagattcaacaaacatatcagattatgctctccttatg
tttgggggtaatctcagtccaagcaaaagtggagagggcattgaaatgctaggaggctat
cttcatttttctgcatcaaaaagtgtgttagatttgataaagaaacttcgaggggaactg
gataaaatcttaaaaaggaaaatcgaagagcccggctttgacatttcggtcgagggaaag
ggtgtagttggtgctgtggttgagttacttcatagtcaagacatacgatactaa
DBGET
integrated database retrieval system
