Nicotiana tabacum (common tobacco): 107787584
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Entry
107787584 CDS
T04643
Name
(RefSeq) uncharacterized protein LOC107787584 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107787584
09122 Translation
03013 Nucleocytoplasmic transport
107787584
03015 mRNA surveillance pathway
107787584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107787584
03041 Spliceosome [BR:
nta03041
]
107787584
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107787584
Spliceosome [BR:
nta03041
]
Complex C
Other components
EJC/TREX
107787584
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107787584
NCBI-ProteinID:
XP_016464661
UniProt:
A0A1S3ZJX2
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All DBs
Position
13:complement(105908549..105960993)
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AA seq
809 aa
AA seq
DB search
MSSPYPIIDNRPIDQLKVTELREELKRRKLPIKGLKQELVRRLAEAILQEQDADHSKSEN
GGDSTPGPDEEMAESVDADNPNDNFDADNTTDKKADEKMSEIDAAENRVQLDEGNFSIEE
PVGGAISTMVEKDLVAQIADAETSAPTKEDQIAEVSVVQTSEPVSVSVESATALSGQGSQ
KYETKNESGDLKEQLENPISNSLLVEENVSSSILESQVSEISPVLGFQVNSDFVSTDVSI
DGKTELKDNVIANDFKLELDVKPEMVKLFSSSDVPDDAKSHTMDVEEPHDKKMSTEEPGN
ENDKYPEVSVVQTSDPVDVSVESVTALSGQDSQKYEIQNESEDIKAQLENHISNSSVDET
NVSSSDLETQVSELSPVLGFQVKSDSVSADVSIDEKIELMDNVIAHDVKIELDVKPDSVQ
LSSSSVDPGDGKSQPMDVEEPHDKKVSVEEPGNENDKYVDLMKTDGNGDSAEKLQLDRSP
GDDSTEEDVSEGKLADSKLDSVKKIDGKKEIEVNTSREVGSVASVDDARSVAHIDTNVVD
DGPIVQSMKRKPHDQGTAAGSNDIVKRQRKWNSEDLKVPENKKGDAVASTTPKDFFQPTF
RRSFSRSDSVAKEEPPKERVVPPSSKVPTNSLLIENFLRPFTLKAVQELLSKTGTVTNFW
MDAIKTHCFVSFSSVEEAIETRNAVYNLQWPPHGGKLLVAEFVDPQGVKDKVEAPPQSPS
THATPVNTIPAAAPPSAQPQPSPRQQMQNKQLQPEKLPPPPLPEKLDPPIVTLDDLFRKT
KATPRIYYLPLSDEQVAEKLKAQGKIIKQ
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgccgtatcccattattgataatcgaccaattgatcagttgaaggttacagag
ctaagagaagagcttaagagacgtaagctacccataaaggggttgaagcaagagttggta
aggcgattagctgaagcaatcctccaagagcaggatgctgatcattctaagtctgagaat
ggtggtgattccacgcccgggccagacgaagaaatggctgagtccgttgatgcagataat
cctaatgataattttgatgctgataatacgacagataagaaagcggatgagaaaatgagc
gagatcgatgcagctgaaaacagagtgcaattggatgaagggaatttctcaattgaggag
ccggttggtggtgctatttctactatggttgaaaaggatctggtagcccaaattgctgat
gcggaaaccagtgctccaaccaaagaggaccagatagctgaagttagtgttgtgcaaacc
agtgaacctgtcagtgtgagtgttgagtctgctacagctttaagtggacaaggctcgcaa
aaatatgaaaccaagaatgagagtggggatttaaaagagcagctggagaatcccatttca
aattctttactagtggaggaaaatgtcagttcatccattctggaaagtcaggtatctgag
atcagccctgttttagggttccaagtaaactctgattttgtttccactgatgtctcaatt
gatggaaaaacagaactgaaggataatgtaatagctaatgatttcaaattagaattagat
gttaaacctgagatggtgaagctattctcgagcagtgatgtccctgatgatgcaaaatcg
catactatggatgttgaggaaccacatgacaagaaaatgtctacagaagaaccaggcaac
gaaaatgataaatatcctgaagttagtgttgtgcaaaccagtgatcctgtcgatgtgagt
gtagagtctgtcacagctttaagtggacaagactcacaaaaatatgaaatccagaatgag
agtgaggatataaaagcgcagctggagaatcacatttcaaattcttcagtggatgagaca
aatgtcagttcatccgatctggaaactcaggtatctgagctcagccctgttttagggttt
caagtaaaatctgattctgtttccgctgatgtctcaattgatgaaaaaatagaactgatg
gataacgtaatcgctcatgatgtcaaaatagaattagatgttaaacctgatagtgtgcag
ctatcatcaagcagtgttgaccctggtgatggaaaatcacaacctatggatgttgaagag
ccacatgacaagaaagtatctgtagaagaaccaggcaacgaaaacgataaatatgttgat
ctaatgaagactgatggcaatggggattctgcagagaagttgcaattagaccggagtcct
ggtgatgattccactgaggaggatgtttcagagggtaaattagctgattctaagttggac
tcggtgaaaaaaatagatggaaagaaagaaattgaagtgaacacaagtagggaggtagga
tctgttgcttctgtggatgatgctaggtcagttgcccatatagataccaatgttgtagac
gatggtcccattgtgcagtctatgaaaagaaaacctcatgatcaaggaacagcagctggg
agcaatgatattgtaaagaggcagcgtaaatggaattcagaagatcttaaagttcctgag
aacaagaaaggtgatgctgtggcctcaactacccccaaggattttttccagcccactttc
agacgcagtttctctagatctgattcagtggccaaggaggaaccaccaaaagaacgtgtg
gttcctccatcatcgaaagtgcctactaattctctcttgatcgagaattttctgcggcct
ttcaccttgaaagcggtgcaagagctacttagcaagacgggtactgtgacaaatttctgg
atggacgctattaagacccactgctttgtttctttttcatctgtagaagaagctatagaa
actcgaaatgctgtatacaatctgcaatggcctccacatggaggaaagctacttgttgct
gagtttgttgatccccagggagtgaaagataaggttgaagcaccacctcaatctccttca
actcatgcaactcctgtgaacacaatcccggctgcggccccaccttctgcccagccccaa
ccatcaccaaggcaacagatgcagaacaagcaacttcaaccggagaaacttccaccacct
ccacttcctgagaaactcgaccctccaattgtcactctggatgatctctttagaaagaca
aaggcaacacctcgcatttactatttgcctttgtctgatgaacaagttgcagaaaaattg
aaggcacaagggaagattatcaagcagtag
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