Nicotiana tabacum (common tobacco): 107788822
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Entry
107788822 CDS
T04643
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107788822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107788822
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107788822
mRNA cycle factors
Common to processing body (P body) and stress granule
107788822
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
Motif
Other DBs
NCBI-GeneID:
107788822
NCBI-ProteinID:
XP_016466035
UniProt:
A0A1S3ZNS8
LinkDB
All DBs
Position
Un
AA seq
672 aa
AA seq
DB search
MSDIFKTFSTRFVRLNGILFTRTSLETFGEVQSVVKKDLLELLSSGTDEKYNFGSDTADC
KLAFVRLVAILIFTVHNVNKESENQSYAEILQRSVLLQNAFAAVFEFMGHVVERCVQLND
PTTSFLLPGVLVFVEWLASRQDVALGNEPEEKQTRARSFFWKNCIAFFNKLLSSGFKFVD
DDKDDTCFFNMSRYDEGESDNRLALPEDFELRGFIPFLPAQLILDFSRKHSFGGDGGIKE
KKSRLQRIIAAGKALANVVRVGEEGIYFDGRAKKFIIGIEPQVSDDYALNCSMEVPKLSG
IELENSAAGQLTVGPLQPKQQLYVEGEEEDEVIVFKPSVVEKHVNGSASNMMTSEGHDSG
VSAASVPPGVSVASVGLGNEMGPFSAALDGLIMQSALHASARPPSSIANNSGQYMQPIQP
STSLWSVERAAVMNGLASLNMIGNGPTVISELQDQVFPPEPYSVPFPQSVNFGMTNNIRV
HIPDAAIPSNFSSLSSSVVGIDSMSIKSPSVMSTGIRKNPVSRPIRHLGPPPGFGSVPSK
VLEESSSAMTIKNEHTTLPPMDDYSWLDGYQLPSSHQSIGFNNSINHSTQNYHSMSKSSS
SVGMVSFPFPGKQVNSLHVQSGNQRGWEDYQISEQLKLYQGQPQQLQSGNQQSVELPQRH
EGQSLWEGHFFV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacatcttcaaaaccttcagcacaagatttgttcgattgaatggtattcttttc
actcgcactagtttggagacttttggagaagtgcaatcggtggttaaaaaggatctgctt
gagcttctctcctctgggactgatgagaagtataattttggttctgacactgccgactgt
aaactggcttttgtgaggctcgtggccatcctaatattcactgttcataacgtgaataag
gaaagcgaaaaccagtcatatgctgagattttacaaagatcggttctcctacagaatgca
tttgctgctgtgtttgagttcatgggtcatgtagttgaaagatgtgtccaattaaatgat
cccacaacaagtttccttttgccaggggttttggtgtttgtagaatggttagcgagccgt
caagatgttgcacttggcaacgaaccagaagagaagcaaaccagggctagatcatttttc
tggaagaactgcattgctttctttaataagcttttgtctagtgggtttaagtttgttgat
gatgacaaggatgatacatgcttcttcaatatgagcaggtatgatgaaggagagagcgat
aatcgtcttgcattacccgaggattttgagctgagaggatttataccttttcttccggca
caacttatccttgatttttcaaggaaacattcttttggtggtgatggtggcatcaaagag
aagaaatcacgtctccagaggataatagcagcaggaaaggctcttgctaatgtggtccgt
gttggagaagagggaatatattttgacggtagagcaaagaaattcatcattggcattgag
cctcaagtatctgatgattatgcgcttaattgctccatggaagttcccaaattgagtggt
attgagttggagaattcagctgcagggcagttaactgtaggacctctgcagccaaagcag
caattgtatgtggaaggtgaggaagaagatgaggtaattgtttttaagccatcggtggta
gaaaagcatgtgaatggaagtgcttcaaacatgatgacctcagaaggtcatgattctggt
gttagtgctgccagtgttcctcctggggttagcgtggcctctgttggtctaggaaatgaa
atgggtccattttcagctgcacttgatggattgatcatgcagagtgcattacatgctagt
gcaaggccaccctcaagtattgccaataacagtggccaatatatgcagcctattcaacca
agtacttcattgtggtccgttgaacgagctgctgttatgaatggacttgccagcttgaac
atgataggaaatggtccaactgtaatatctgagttgcaagatcaagtatttccacctgag
ccatattctgtcccttttccccagtctgtcaattttggcatgacaaataatattcgtgtg
catatcccagatgctgccataccatctaacttcagttcactttcatcctcagtagttggt
attgatagcatgtcaattaagtccccatcagtcatgtcaacaggcataaggaaaaatcca
gttagcagacctattaggcatctgggtccgcctccaggctttggttctgttccttcgaaa
gtcctggaggagtcttcttcagcaatgaccataaagaatgaacatactactcttcctcct
atggatgactatagctggctggatggatatcagttgccttcatcacatcagagcattggt
ttcaataactccattaatcattcaacacaaaactaccactcaatgagcaagagtagtagc
tccgttgggatggtgagctttcctttccctgggaaacaggtaaactctctgcatgtgcaa
tcagggaaccagagaggttgggaggactaccagatatctgaacaattaaaactgtaccag
gggcaacctcagcaactccagagtggaaaccaacaatctgttgaactgcctcagcggcat
gaaggacagtctctgtgggaaggccatttttttgtgtga
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