Nicotiana tabacum (common tobacco): 107789754
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Entry
107789754 CDS
T04643
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107789754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nta03400
]
107789754
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107789754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
107789754
NCBI-ProteinID:
XP_016467110
UniProt:
A0A1S3ZRF5
LinkDB
All DBs
Position
Un
AA seq
1286 aa
AA seq
DB search
MKRQLHYNAHPIDPHPFEAFWYGSWHAVERLRISVGTITTYVLVNEEVIEENIPVTDLRI
RSRKATLSDCACFLRPGLDVCALSIPYQAEDSDDEQDVKPVWIDAKIRSIERKPHDLTCT
CQFYVSVYVTQGPPPIVKKALSKEINMLHIDQIAILQRLEPKPCEDKHYRWSSSEDCNSL
QNFKLFIGKFSSDLTWLVAASVLKEATFDVRSIHNQIVYEIVDDDLDKKEPNMDQLSYSV
NFKLENGVSTTAAVQFSRDISVVNSTSDASEAGPLILYDPMGPRRSKRRFVQPERYNGCD
DDLTDFDVEMTRLVGGRRKVEYEELPLALSIQADHAYKNGEIEENIRSYERKFFGGNIRP
QEKKPSESSAGWRNALKSDINTLADKKSVTADSQRQLAIVPLPPVGTDLIGDEHVPLDVE
VPEDVSAEIGEIVSRYIYFNGSSTSHNRNTSRMNFTKPEARRWGQVKISKLKFMGLDRRR
GGLGSHKKYKRNTSKKDSIYDIRSFKKGAVAANVYKELIRRCMANIDATLNKEQPPIIDQ
WKEFQSTKSGHRESTENVSANKEEEISEIDLLWKEMELALASCYLLDDSEDSHVQYASDV
RIGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSANYSSSKEQRTEEAT
DYKQDEDGLDSLSIPASSNAPSSSGEGEDNVWALIPDLRNKLRVHQKRAFEFLWKNIAGS
VVPAEMEPESKKRGGCVISHTPGAGKTLLIIAFLVSYLKLFPGSRPLVLAPKTTLYTWYK
EVLKWKIPVPVYQIHGGQTYKGEVLREKMKLCPGLPRNQDVMHVLDCLEKMQMWLSQPSV
LLMGYTSFLTLTREDSPYAHRKYMAQVLTQCPGLLILDEGHNPRSTKSRLRKGLMKVNTR
LRILLSGTLFQNNFGEYFNTLTLARPIFVDEVLKELDPKYKKKNKGASRFSLENRARKMF
IDKISSVIDSDIPKKRKEGLNILKKLTGGFIDVYDGGSSDKLPGLQCYTLMMKSTTLQQE
ILVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQQFKFDLKL
GSKVKFVMSLIPRCLLRKEKVLIFCHNIAPINLFLEIFERFYGWRKGIEVLVLQGDIELF
QRGRIMDQFEEPGGPSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFRP
GQDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLREI
VEEDRATLFHAIMKNEKASNMGSLQE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcaattacattacaatgcccatccaattgatccacacccttttgaggcattc
tggtacggctcttggcatgctgtggagcgccttaggattagtgtagggaccatcactact
tatgttctagttaatgaggaggtgattgaggagaatattccggtaacagatcttcgaata
aggtctagaaaagctactttatctgattgtgcttgctttttacgacccggacttgatgtt
tgtgcgctttcaatcccttaccaagcagaagattcagatgatgagcaagatgtcaagcct
gtatggattgatgcaaaaataagatcaatagagaggaagcctcatgacctcacttgtact
tgccaattttatgtcagcgtttatgtcactcaaggtcctcctcctattgttaagaaagcc
ctaagtaaagagataaacatgctgcacattgatcagattgccattctccaaagacttgaa
cctaaaccttgtgaagacaaacattatcgctggagttcatctgaggactgcaattcgttg
cagaattttaaactatttattggaaaattctcctctgacctcacatggttagtggctgca
tcggttctgaaagaagctacatttgatgtgagatcgatacacaaccagattgtctatgag
attgtggatgatgatcttgacaaaaaagaaccaaatatggaccaactttcttactctgtg
aatttcaagttagaaaacggagtttcaacaaccgctgctgttcaattcagtagggatatc
tctgtcgtaaattctaccagtgacgcaagtgaagctgggcctctgattctgtatgaccct
atgggcccacgaaggtcaaagcgtcgatttgtgcagccagagcgttacaatggatgtgat
gatgatttgacagattttgatgttgagatgacacggttagttgggggtaggagaaaagta
gagtatgaagaactaccacttgcactatctattcaagctgatcatgcttataagaatggt
gaaattgaagaaaatatcaggtcttacgagagaaagttttttggaggaaatattagacct
caagagaagaagccctctgaaagttcagctggatggagaaacgcactcaaatcagatata
aatacgcttgcagacaagaaatcagttacagctgacagtcaacgtcaacttgctattgtt
cccctgcctcctgtgggaactgatttgattggcgatgaacatgttccacttgatgtcgaa
gttcctgaagatgtgtcagcagaaattggtgaaatagtttccagatacatttatttcaat
ggctcttcaacatcgcataataggaacacttctaggatgaacttcacaaaaccagaagca
agacgctgggggcaagtcaaaatttctaagttaaaattcatgggacttgatcgtagacgt
ggggggttaggttcacataagaagtacaaaagaaatacttcaaagaaggacagtatttat
gatatacgatcatttaaaaagggtgctgtagcggctaacgtgtacaaggagttgataagg
aggtgcatggcaaacattgatgccacccttaataaggaacaaccaccaataattgatcaa
tggaaagagtttcagtcaacaaaatctggtcatagagagtccactgagaatgtctcagcg
aataaggaggaggagatttcagaaattgatttgttatggaaggagatggaactagccctg
gcatcatgttatcttcttgatgacagtgaggattcccatgttcaatatgcaagtgatgtc
aggataggagctgaaatacgtggagaagtttgtcgacatgattatcgacttaatgaagaa
atcggaattatttgccggttatgtggatttgttagcaccgaaataaaggatgttccacca
ccatttatgccttctgcaaactacagttcaagcaaggaacaaagaactgaagaagctaca
gattacaagcaggatgaagatggccttgatagtttatccattcctgcttcttcaaatgca
ccctcatcatcgggagaaggcgaagacaatgtctgggctttgatacctgatcttagaaat
aaattacgggtacaccaaaagagagcctttgaatttctgtggaaaaatattgctggatcc
gtagtacctgctgaaatggaaccagaaagcaaaaagagaggtggctgtgttatttctcat
actccaggagctgggaaaaccttgctaattattgccttccttgtaagctacctgaagtta
tttcctgggtcacggccattggtccttgctccaaagacaacactctacacctggtacaaa
gaagtacttaagtggaaaattcctgtgccagtctaccaaattcatggtggtcaaacctat
aagggagaggttttgagggaaaagatgaaattgtgtcctggtctccctcgcaaccaggat
gtcatgcatgtcttggactgccttgaaaaaatgcagatgtggctttcgcaacccagtgtt
ctccttatgggctatacctcctttttaacactgacacgggaagattcaccttatgcgcat
aggaaatatatggcccaggtgttgacgcagtgtccagggctcctgatacttgatgaaggg
cacaatccgagaagtacaaaatccaggttaagaaagggtctaatgaaggtcaatacacga
cttaggattttgctttctggtacactattccagaataattttggggagtatttcaacaca
cttaccttagcaaggccaatctttgttgatgaggtcttgaaggagctggatcccaagtac
aagaagaaaaacaaaggtgcatctcgcttttcattggaaaatcgagcgagaaagatgttt
attgataaaatctcaagtgtcattgattcagacatccccaagaaaaggaaagaaggccta
aacatattgaagaaactaacaggtggattcatagatgtgtatgacggtggatcatccgat
aaactccctggtttacaatgctacaccttgatgatgaaatcaaccactcttcagcaagaa
attttggtgaagctgcaaaatcaaaggcccatctacaaaggatttcctctggagttggag
ctgttgattacccttggtgcaatccatccttggttgatcagaacgacagcatgttctagc
cagtacttcaaggaagaggagctcgaggctcttcagcaattcaagtttgatctgaagttg
ggttcgaaagtcaaattcgtaatgagcctaatacctcgttgtctcctcaggaaagaaaag
gttttgatattctgccacaatattgctccgattaatcttttcctggagatatttgagagg
ttctatggttggagaaagggcatcgaagtactggtgcttcaaggtgacattgagcttttc
caaagaggaaggataatggatcaatttgaggagccaggaggaccatcaaaggtaatgttg
gcatccattacaacttgtgcagaaggcattagcttgacagcagcatcacgtgtaatatta
ctggattcagagtggaatccttcaaagagcaagcaagccattgcacgggcttttcggcct
ggtcaggacaaagttgtgtatgtctaccagctcctagccacaggcacactggaagaggag
aaatacaaaagaacgacatggaaagagtgggtttcaagcatgatattcagtgaagacctt
gtggaagacccttctcactggcaagcacccaaaattgaagatgaattgttgagagagatt
gtcgaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttctaat
atgggaagtctgcaggaataa
DBGET
integrated database retrieval system
