Nicotiana tabacum (common tobacco): 107789889
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Entry
107789889 CDS
T04643
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107789889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nta03400
]
107789889
Enzymes [BR:
nta01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
107789889
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
107789889
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
107789889
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
107789889
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107789889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
CPT
AAA_29
G-alpha
AAA
nSTAND3
AAA_25
DUF6205
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
107789889
NCBI-ProteinID:
XP_016467251
UniProt:
A0A1S3ZS61
LinkDB
All DBs
Position
2:complement(30067866..30073449)
Genome browser
AA seq
730 aa
AA seq
DB search
MEAMEIDPETNSKGKDEAKPIMVILMGAPGSGKSTFCDLVMRVSTRPWVRICQDTIGNGK
AGTKNQCLTGAASALKEGKSVFIDRCNLDREQRADFLKLVGPEVEKHAVVLDLPAKVCIS
RSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGYTRITVCQDEKDVQAAINTYTALG
PSDKLPPGFFGQKNSDAKVQLGIMKFLKKKDPPGCSDTVTNVSPENIQSHATKEKDSNQV
LESREEPKMASAGSNISLENTPTLAFPSISTADFHFNLDKASDIIVEKVEEYVNKLGNAR
LVLVDLSQNSKILSLVKAKAAEKNIDTKKFFTFAGNITKLYSEGGLHCTVIANATNWRLK
PGGGGVNAAIFSAAGPALETATKVRAGSLNPGKAIVVPLPSSSPLFSREGVTHVIHVLGP
NMNSQRPNHLNNDYVKGCQILREAYSSLFDGFAFIVRTQGKPVKDNFEKELKREAQAEQG
STNGEKAKREAVCEVDMNKKYKSFVKELGPNVGSSGDGNTGEQTRKAWGSWAQALYDTAM
HPERHKNIIEKSDDVVVLNDLYPKAQKHLLVLARIEGLDRLADVQKEHLTLLKTMHSVGL
KWAEMFLSENNSLIFRLGYHSVPSMRQLHLHVVSQDFDSKHLKNKKHWNSFNSPFFQDSV
DVIDEVSQNGKATLKDENFLSMELRCHRCQSAHPNIPRLKAHISSCQASFPAFLLQNGRL
VFLAGKDANH
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaatggagattgatcctgaaactaattcaaaagggaaggatgaagcgaaaccc
ataatggtaatattgatgggtgctccaggaagtggtaagtctacattttgtgaccttgta
atgcgagtctctacccgcccttgggttcgtatttgccaggataccattgggaatggtaag
gctgggacaaagaaccaatgcttgacaggtgcagctagtgcgctaaaggaaggaaaaagt
gtatttatagatagatgcaacttggatagagaacagcgggccgattttttgaagcttgtt
ggtccagaagttgagaagcatgctgttgtgcttgatcttccagctaaggtttgtatttct
cggtcggttaagaggacggggcatgaaggaaatttgcaaggtgggaaggctgctgcagtt
gtgaataggatgctacaaaagaaagagttgcctaagctgaatgaaggctatactcgaatt
acggtttgccaagatgaaaaagatgttcaagctgcaatcaatacttacactgcacttggt
ccgtcagataaacttccaccaggctttttcggccagaagaactcagatgccaaagtccaa
cttggtataatgaagttcctaaaaaagaaagatcctcctggatgttctgatactgtgacg
aatgtctctccagagaatattcaatctcatgccaccaaggaaaaggactccaaccaagta
ctagagagccgtgaagaacctaaaatggcatctgctggcagtaacatttctttagaaaat
acccccacacttgcatttccatctatttctacagcagatttccatttcaatcttgataaa
gcatcggatataatagttgaaaaggttgaagaatatgtaaataagcttggaaatgctagg
cttgtcttggtggatttgtctcagaattcaaaaatactgtcccttgtcaaggctaaagct
gcagagaagaacatcgacaccaaaaagttttttacatttgcggggaatataactaaacta
tactcggaaggaggtttgcactgcaccgtgattgctaatgccactaactggcgactaaaa
ccaggaggtggaggtgtaaatgctgctatatttagtgcagctggtcctgcccttgaaact
gcaaccaaagttagagctggatcccttaatcctggaaaagctattgtcgtccctcttcct
tcatcttctcccttgtttagtagggaaggggttactcatgtcattcatgtccttggacca
aatatgaattcccagagaccaaaccatctcaacaatgactacgtcaagggctgtcaaata
ctccgggaagcttactcatcactttttgatggttttgcttttatagttaggactcaagga
aaaccggttaaggataattttgaaaaagaactgaaaagagaagctcaagcagagcaaggt
tctacaaatggtgagaaagccaagcgggaagctgtctgtgaagttgacatgaacaagaag
tacaaaagctttgtgaaagaacttggacccaatgttggaagttctggagatggaaatact
ggtgaacagacaagaaaggcatggggctcatgggctcaagctctttacgacactgcaatg
catcctgagaggcataagaatataatagagaagtcagatgatgttgttgtactgaatgat
ctttatccaaaggctcagaaacacctcttagttttggcacgtattgaaggtcttgaccgt
cttgcagatgttcagaaggagcacctcacattattaaagacaatgcacagtgttggcttg
aagtgggctgaaatgtttctatcggaaaacaattcattgatattccgccttggatatcat
tcggttccttcaatgcgtcaactgcatcttcatgtggtaagccaagactttgattcaaaa
catctgaagaataagaagcactggaattcattcaactcacccttcttccaggattcagtt
gatgtaatagatgaagttagccaaaatgggaaggccactttgaaggatgagaatttcctt
tccatggagctaaggtgccatcgatgtcaaagtgcacatccaaacattcctcgccttaag
gcacacattagttcttgtcaagcttcctttcctgcatttctgctgcaaaatggtcgtcta
gtttttttagcaggtaaagatgcaaatcactga
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integrated database retrieval system
