Nicotiana tabacum (common tobacco): 107791147
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Entry
107791147 CDS
T04643
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107791147
09123 Folding, sorting and degradation
03018 RNA degradation
107791147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107791147
03041 Spliceosome [BR:
nta03041
]
107791147
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107791147
mRNA cycle factors
Stress granule specific factors
107791147
Spliceosome [BR:
nta03041
]
Complex C
Other components
Complex C specific factors
107791147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_3
RRM_occluded
RRM_5
RRM_RdRP1_2
DUF3465
Motif
Other DBs
NCBI-GeneID:
107791147
NCBI-ProteinID:
XP_016468645
UniProt:
A0A1S3ZW44
LinkDB
All DBs
Position
2:5771416..5778307
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AA seq
615 aa
AA seq
DB search
MAIPPPPTASLYVGDLHHDVTDGQLFDAFSEFESLVSVRVCHDLTTGRSLCYGYVNFISP
HDVVRAIEMKNHSTLNGKVIRVSWARRDSDVRISGTGNVFIKNLNDTIDSAKLQEMFQKF
GNISSCKVVVSEDGRSKGYGFVQFETEESANAAIEKLNGSVVGGKQMYVGKFAKKSDRIL
PNPDEKYTNLFIKNLDLDISEEHLREKCSEFGKVSSLAIAKDENGVSKGFGHVNFENPDD
ARRAMEAMNGSKLGCKILYVARAQKKTQREQILRHLFEERRKARIIKYQGSNVYVKNIDG
DVTDNELRELFSQCGNITSAKLMLDEKGVSKGFGFVCFSTPEEANKAVNSFHGFMFGQKP
LYVAVAQRKEERQAQLQLKHAQGIAGLTGSSAFLPGGYPPLYYQTLHDLQVPARPRLLYQ
PLSMRRGWMVNGFTNSIRPACQISLIPNTSQYRQSRETKNGHMPVPYVPHLQQSTQSVAS
LKQSSNAQQAWQVKYTPNGRLRDMKKGFVVSSSGTSKVGSCSWGSENLSNTLAAAPPTKQ
KQILGEHLYPLVSQHKPNLAAKVTGMLLEMDNSELLSLLKSPASLAAMVEEAVKVVELSK
TEVSNQDSIQKLHSI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcctcctcctccgacggcgtcgctgtacgtcggcgaccttcaccacgacgtc
accgatggccaactcttcgacgcattctcggagttcgaaagcttggtttccgttcgcgtc
tgtcatgacttaacgaccggccgttccctctgttacggctacgttaacttcatttctcct
cacgatgttgtgcgtgctattgagatgaaaaatcattccactctcaatggaaaagttata
agggttagttgggctcgtcgtgattctgatgtgagaattagtggaaccggaaatgtgttc
atcaagaatctaaatgatacaattgatagtgcaaagctccaagaaatgttccagaagttt
ggaaatatctcttcctgtaaagttgtcgtttctgaggatggaaggagtaaaggatatggc
tttgtccagtttgagactgaggaaagtgcaaacgctgctattgagaagctcaatggatct
gtggttggaggaaagcagatgtatgtaggtaagttcgccaaaaagagtgaccggattctg
cccaaccctgatgaaaagtatacaaatttgtttatcaagaacttggatcttgacatctca
gaagagcatcttagagaaaagtgctctgagtttgggaaagttagtagcttggccattgca
aaagatgagaatggagtttcaaaaggttttggtcatgtgaactttgagaatccagatgat
gctaggagagcgatggaagctatgaatggatcaaaacttggctgcaagatcttgtatgta
gccagagcacaaaagaaaacacaacgcgaacagatattgaggcatttgtttgaggagaga
aggaaggcacgaattattaagtaccagggttcaaatgtgtacgtcaaaaatattgatggc
gatgtcacggataatgagttgcgtgaattgtttagtcaatgtggcaacatcacttctgca
aaacttatgctagatgagaaaggagtcagcaaaggctttggatttgtatgtttttctaca
ccagaggaggccaacaaagcggtgaatagttttcatggatttatgtttggccaaaagcca
ttgtatgtggctgttgctcaaaggaaagaggaaaggcaagctcaattgcagcttaagcat
gcacaaggcattgcaggactcaccggatcttcagcttttcttcctggtggatatccccct
ctttactaccaaacccttcatgatctacaagtacctgcacgacccaggctactgtatcag
cctctgagtatgaggcgcggttggatggttaatggattcacaaactctattagacctgct
tgtcaaatttccttgattccaaatacttcacaatataggcagagtagggaaacaaagaat
ggacatatgccagttccatatgtgcctcatttgcagcaatcgactcaatcagtggcttca
ttaaaacaatctagcaatgcccagcaagcttggcaggtcaaatatacaccaaatggtcgt
ttgcgtgatatgaaaaaaggatttgttgtatcctcttctggcactagtaaagtaggatct
tgctcttggggatcagaaaacctgagtaacacgcttgcagctgctcctcctacgaagcag
aaacagatacttggagagcacctttatcctctagttagtcaacacaagcccaatcttgcg
gcaaaggtcacgggaatgctcttagaaatggacaactcagagcttttatcattgttgaag
tcaccagcatctctggcagctatggtggaagaagctgttaaggtggtcgagctctctaag
actgaagtgtcaaatcaagattcaattcagaagttgcactcaatttag
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