Nicotiana tabacum (common tobacco): 107792463
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Entry
107792463 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107792463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107792463
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107792463
Spliceosome [BR:
nta03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107792463
Complex B
107792463
Complex C
U2 SnRNP specific factors
107792463
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107792463
NCBI-ProteinID:
XP_016470161
UniProt:
A0A1S4A0S1
LinkDB
All DBs
Position
Un
AA seq
777 aa
AA seq
DB search
MSKRKFGFEGFGINKQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYEEHDA
VGEDNKNVGGGGGGGAEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVEDDPME
SFLRAKKDVGLQLAAEALNAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPIP
ALEHSEIDYEAFNKDFYEEKPSISGMSDPEVNEYRSSLAIRVSGFDVPRPVKTFENCGFS
GELMKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL
QKEEGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVV
ATPGRLIDMLRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILTDPVRVTVGEIGMANEDITQLVQVIPSDAEKLPWLLEKLPVLIDNGDV
LVFASKKATVDEIESQLAQKGFRVAALHGDKDQVSRMETLQKFKSGIYHVLIATDVAARG
LDIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELANSLVAA
GQTVSIELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGNNRGVRGVDFGLGIGYNAESNN
PPQNAAPSRSAAVNSLRTGMMAQFKSNFVAASSNSQNQGMNNTAGAYPNKGMVLQGFVSG
GTIGGESNASRISSTFAAATPGAYSSSQPARDGANQKSSESSKEKSRERRRPSGWDR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggatttggaataaataagcaaacgacgtacaac
ttcgagcgaaatcaagctcctcagcgactgtacgtcccgccgtcgtcacgctccggcggt
agccacgacaattacgaagacaccgacttagataacatcgagtacgaagaacacgatgcc
gtcggagaggacaacaaaaacgttggtggaggaggaggcggcggcgccgaagatgatgag
attgatccgctcgatgcgtttatggaagggattcatgaggaaatgaaggcggcgccgcct
ccgaagccgaaggagaagcttgataagtataaggatgatgtagaggatgatccgatggag
agttttttgagagcgaagaaggatgtagggttacaattggctgctgaagctcttaacgct
ggttataattcggacgaggaggtttatgctgcggcgaaggctgttgatgcaggattggtt
gagtatgactcggatgataatcctattgttgttgataaaaagaagatcgaacctattcct
gctttggaacatagtgagatagactatgaggctttcaacaaggacttttacgaggaaaag
ccttctatttcaggtatgagcgatccggaagttaatgaatataggtcaagcttggcaatt
cgtgtatcaggctttgatgttccaaggcctgttaagacatttgaaaactgtggtttttct
ggtgagttgatgaaagctatcagtaaacagggatatgaaaagcccacaccaatacagtgt
caagcattgccgattgtgctctctgggagagatattattggtattgctaaaactgggtct
ggcaagactgctgcttttgtgcttcctatgattgtccacattatggatcagcctgaactt
cagaaagaagaaggtcccattggagttatttgtgcacctactagggaattagcacatcaa
atatttgtggaggcaaaaaaattctctaaatcgcatggtatccgtgtctctgcagtttat
ggaggaatgtctaagttggatcaatacaaagaactaaaggcaggatgtgagattgttgtt
gctactccagggaggttgatagatatgcttagaaagaaggcatttacaatgttgagggca
acttacctagtactagatgaggctgatcggatgtttgaccttggttttgagcctcagata
aggtccattgtcggtcaaattagacctgatcgtcaaacattgctcttttcagcaactatg
ccccgcaaagttgaaaagcttgccagagaaatattgacagatcctgtaagagttaccgtg
ggtgagattggcatggctaatgaggatattacacaattagttcaagtgattccttcagat
gctgaaaaattgccttggcttttggaaaagctccctgtactgatcgacaatggtgacgtt
cttgtcttcgcttcgaaaaaggcaacagtggatgagattgaatctcaactggctcagaag
ggatttagagttgcagctctccatggtgacaaggatcaagtttctcgtatggagacgctg
caaaagtttaaatctggcatatatcatgttcttatcgcaactgatgttgctgcccgtggt
cttgacatcaaatcaattaagtcagtggtgaactatgacatagctaaagacatggacatg
catgttcacagaattgggagaacaggtcgtgctggtgacaaagatgggacggcctacact
cttattacacagaaggaagcgcgttttgctggtgaactggctaacagtttggttgctgcc
ggtcaaactgtgtccatcgaactaatggaccttgctatgaaggatgggaggttccggtcc
aaaagggatgcaaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaaacaat
agaggtgtacgaggtgtggattttggtctaggtattggatacaatgctgaatcaaataac
cctccccagaacgctgctccaagccgttctgcagcagttaattccctgaggacaggcatg
atggcacaatttaaaagtaactttgttgctgcatcgtcaaattctcaaaatcaagggatg
aataacacagctggtgcatatccgaacaagggaatggtcttacaaggctttgtctctggt
gggacaataggtggagaaagtaatgcttcccgtattagttccacatttgctgctgctaca
cctggtgcatattcttctagtcagccagctagagatggagcaaaccagaagagttcagag
agttcaaaagagaagtctagagaaagacggaggccttctggttgggatcgttga
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