Nicotiana tabacum (common tobacco): 107793015
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Entry
107793015 CDS
T04643
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107793015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107793015
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107793015
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107793015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107793015
NCBI-ProteinID:
NP_001312482
UniProt:
A0A023PKW7
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Position
9:complement(99287181..99288020)
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AA seq
279 aa
AA seq
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MAVEKAASDPNSIKIREVWSDNLDSEFELIRKAIDQYPFISMDTEFPGVIFKPEVGSFQQ
NRRRHGQHYKLLKSNVDALNLIQLGLTLSDADGNLPDLGSGGVHRYIWQFNFSDFDVARD
RHAPDSIELLRRYGIDFEKNKEFGVDSARFAELMMSSGLVCNDSVNWVTFHSAYDFAYLV
KVLTRRELPGELQDFLGILRVFFGNNVYDVKYLMRFCELYGGLDRVAKALEVNRAVGKCH
QAGSDSLLTWHAFQKIRDVYFVKDGPGKYAGVLYGLEVY
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgaaaaagctgcttcggatccgaactcgattaagatccgagaagtttggtcc
gataatttggattctgaatttgaacttatacgaaaagctattgatcagtaccctttcatc
tcaatggatactgaattcccgggcgttattttcaagccggaggttggttctttccagcaa
aatcgccggcgacacgggcaacattataagttgttgaagtcaaacgtagacgctttgaac
cttattcagctaggactcacgttgtcggacgccgacgggaatttgccggatttgggttct
ggcggggtgcaccggtacatatggcagttcaatttttccgacttcgacgtggcgcgtgat
cgtcacgcgccggactccatcgagcttttgcgtcgctacgggattgacttcgagaagaac
aaggaattcggtgttgactcggctcgttttgctgagttaatgatgtcttctgggttggtt
tgtaatgactcagtgaattgggtcacgtttcacagcgcgtacgatttcgcttacctggtg
aaagtcctcacgcgccgggaacttcctggggagttacaggactttttgggaattctcagg
gtgttttttggaaataatgtttatgatgtaaagtacttgatgaggttttgcgaactttat
ggtgggttggaccgggttgcgaaggctctagaggtgaaccgggcggttgggaagtgccac
caagccggttcagatagcctgctgacgtggcatgcattccaaaaaattagggacgtgtac
tttgtaaaagacggaccgggaaaatatgccggcgttttgtatggattagaagtgtattag
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