Nicotiana tabacum (common tobacco): 107794354
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Entry
107794354 CDS
T04643
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107794354
09122 Translation
03013 Nucleocytoplasmic transport
107794354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107794354
03041 Spliceosome [BR:
nta03041
]
107794354
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107794354
Spliceosome [BR:
nta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107794354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
107794354
NCBI-ProteinID:
XP_075088702
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All DBs
Position
16:complement(12048439..12055494)
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AA seq
803 aa
AA seq
DB search
MEITMGEPGEILPEHKPEKSPYEVLQQSKASVEEIVSKMLSIKKESAPKSELRELVTQIL
INFVSLRQANRSILLDEDRVKGETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFRS
KYPDIELVPEEEFFRDAPEEIKSSVMSKDNSHNLMLKRLNYELFQRKELCKLREKLEQKK
KALQETIANRKKFLSSLPSHLKSLKKASLPVQHQLGVLHTKKLKQLQYAELLPPPLYVIY
SQLMAQKEAFGENVELEIVGSVKDAQAVARQQANKDTGVSASLESSKVDDDIDEEDDGQR
RRKRPKKIPSNESLEQAGIYQTHPLKVTLHIHDDEIQSTKLVTLKFEYLIKLNIVCVGVE
GSQENPDNDILCNLFPDDTGLELPRQSAKLIDHSIVFDERRTSRPYKWAQHLAGIDFLPE
VSPSLRGFETSNDETAKHAAVISGLSLYRQQNRVQTVVQRIRARKKAQLALAEQFDSLMN
LNWPVLASRSVPWASHDPRCSLHAWVPLCPSPSQVSTLAVAEIEQVQLPTEVVVDGKSAS
SKEEVESTREDGELPSLVPVTSINDTNVTPNKRINFDPSTKLAFISKSASSPIIKGKSPS
FKKYGDDADLILESDSEVDDTVQVGQDSNNTPGLAGFSDKSWVDCKVQEYCLVLTRKMDN
EERKMKLESKIKISKEYPLRPPLFTLSLYEAIQSENFSMVDSSVWYNELRSMEAEVNAHI
INAIPADEENLVLAHQVRCLALLFDFYAEDGESSSEKRKSTSVIDVGLCKPMTGQLVARS
FRGRDHRKMISWKDSSCTPGYPY
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggagataaccatgggggaacccggcgaaatactaccggagcacaagccggaaaagtct
ccatacgaagttctgcagcaaagcaaagcttcagttgaggaaatcgtttcaaaaatgctg
tccattaaaaaagaaagcgcgccgaaatctgaacttcgcgaactcgtcactcagatttta
atcaatttcgtctctctacgtcaggcaaatagatcaatcttgctcgatgaggatcgcgtg
aaaggtgaaacggaacgtgcaaaagctcccgtcgacttcaccacgctgcagcttcacaac
ttgatgtatgaaaaaagtcattatgtgaaagctataaaggcttgcaaagatttcaggtca
aaatatcctgatattgaactggttcccgaggaagaattctttagagatgcacctgaggag
ataaaaagctctgttatgtcaaaggacaactcacacaatttgatgctaaagcggctcaat
tatgagctattccagcgcaaagaattatgcaagcttcgtgagaaactggaacagaaaaaa
aaggctctacaggagaccattgcaaacagaaagaagttcttgtcaagtctcccgtcacac
ctaaaatcactcaagaaagcatccttgccggtgcagcaccaacttggagttctgcacaca
aaaaagttgaagcagttgcaatatgcagagttgcttcctccgcctctctatgttatttat
tcacagctaatggcccaaaaagaagcctttggagaaaatgtagagctggagattgttggt
agtgtgaaggacgctcaagctgttgcccgtcagcaagcaaataaagacactggtgtgtct
gccagcttagagagctctaaagttgatgatgatatagatgaggaagatgatggacaacgg
agaagaaagcgtcccaaaaagatacccagcaatgaaagtctggagcaggctggaatttat
caaactcacccacttaaagtcacacttcatatacacgatgatgagatacaatctacaaaa
cttgtcaccttgaagtttgagtacttaattaagttgaatattgtgtgtgttggagttgaa
ggctctcaagagaatcctgataatgacatcttatgcaatttatttccggatgacacaggc
cttgagcttccacgccagtcagctaagctaattgatcattctattgtgttcgatgaaagg
agaacgtcacgaccatacaagtgggcccagcatctggcaggcatcgactttttacctgag
gtgtcaccatcacttaggggttttgagacttcaaatgatgaaacagcaaaacacgctgct
gttatctctggtctatcattgtatcggcagcaaaatcgggtgcaaacggttgtgcaacgg
attcgtgctcggaaaaaggctcagctggctctagcggagcagttcgactctctaatgaac
ctaaactggccagttctagccagtagaagtgttccttgggcctcacacgatcctcgctgt
agtttgcatgcatgggtccctctttgtccatctcctagtcaggtttcaacattggctgtc
gcagaaatagaacaagttcagcttcctacagaagttgtggtggacgggaaatctgcctct
tcaaaagaagaggtagaaagcacgagggaggatggggagcttccatctttagttccagtc
acttctataaatgatactaatgtcactccaaataaaagaatcaattttgatccgtccaca
aagctggctttcatttcaaagagtgccagctctccaattataaaggggaagtcaccaagt
tttaagaaatacggagatgatgcagatcttattctggaatcagatagtgaagtggatgat
actgtgcaggttgggcaggatagtaataatacccctggacttgctgggttcagtgacaag
tcatgggtggactgcaaggttcaggaatattgtctcgttctgacaagaaagatggataac
gaggaaagaaaaatgaaattggaatccaagatcaaaatcagcaaggagtatccacttagg
cctcctcttttcacattgagcctttatgaggcgatacagtcggagaacttttctatggtg
gatagttctgtgtggtacaatgaacttcgcagcatggaagcagaggtcaatgctcacata
ataaacgctatacctgcagatgaagaaaacttagtcttggctcatcaggttcgttgtctt
gccttgctgtttgacttttatgctgaagatggggagtcatcgtctgagaagagaaagagc
acttctgtgattgatgttggtttgtgcaaacctatgactggtcagcttgtcgctcgatca
tttagaggtagagatcataggaagatgatctcatggaaagacagctcttgcacccctggc
tatccgtactaa
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