KEGG   Nicotiana tabacum (common tobacco): 107794354
Entry
107794354         CDS       T04643                                 
Name
(RefSeq) THO complex subunit 5B
  KO
K13174  THO complex subunit 5
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03013  Nucleocytoplasmic transport
nta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107794354
  09122 Translation
   03013 Nucleocytoplasmic transport
    107794354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107794354
   03041 Spliceosome [BR:nta03041]
    107794354
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107794354
Spliceosome [BR:nta03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107794354
SSDB
Motif
Pfam: FmiP_Thoc5 RWD
Other DBs
NCBI-GeneID: 107794354
NCBI-ProteinID: XP_075088702
LinkDB
Position
16:complement(12048439..12055494)
AA seq 803 aa
MEITMGEPGEILPEHKPEKSPYEVLQQSKASVEEIVSKMLSIKKESAPKSELRELVTQIL
INFVSLRQANRSILLDEDRVKGETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFRS
KYPDIELVPEEEFFRDAPEEIKSSVMSKDNSHNLMLKRLNYELFQRKELCKLREKLEQKK
KALQETIANRKKFLSSLPSHLKSLKKASLPVQHQLGVLHTKKLKQLQYAELLPPPLYVIY
SQLMAQKEAFGENVELEIVGSVKDAQAVARQQANKDTGVSASLESSKVDDDIDEEDDGQR
RRKRPKKIPSNESLEQAGIYQTHPLKVTLHIHDDEIQSTKLVTLKFEYLIKLNIVCVGVE
GSQENPDNDILCNLFPDDTGLELPRQSAKLIDHSIVFDERRTSRPYKWAQHLAGIDFLPE
VSPSLRGFETSNDETAKHAAVISGLSLYRQQNRVQTVVQRIRARKKAQLALAEQFDSLMN
LNWPVLASRSVPWASHDPRCSLHAWVPLCPSPSQVSTLAVAEIEQVQLPTEVVVDGKSAS
SKEEVESTREDGELPSLVPVTSINDTNVTPNKRINFDPSTKLAFISKSASSPIIKGKSPS
FKKYGDDADLILESDSEVDDTVQVGQDSNNTPGLAGFSDKSWVDCKVQEYCLVLTRKMDN
EERKMKLESKIKISKEYPLRPPLFTLSLYEAIQSENFSMVDSSVWYNELRSMEAEVNAHI
INAIPADEENLVLAHQVRCLALLFDFYAEDGESSSEKRKSTSVIDVGLCKPMTGQLVARS
FRGRDHRKMISWKDSSCTPGYPY
NT seq 2412 nt   +upstreamnt  +downstreamnt
atggagataaccatgggggaacccggcgaaatactaccggagcacaagccggaaaagtct
ccatacgaagttctgcagcaaagcaaagcttcagttgaggaaatcgtttcaaaaatgctg
tccattaaaaaagaaagcgcgccgaaatctgaacttcgcgaactcgtcactcagatttta
atcaatttcgtctctctacgtcaggcaaatagatcaatcttgctcgatgaggatcgcgtg
aaaggtgaaacggaacgtgcaaaagctcccgtcgacttcaccacgctgcagcttcacaac
ttgatgtatgaaaaaagtcattatgtgaaagctataaaggcttgcaaagatttcaggtca
aaatatcctgatattgaactggttcccgaggaagaattctttagagatgcacctgaggag
ataaaaagctctgttatgtcaaaggacaactcacacaatttgatgctaaagcggctcaat
tatgagctattccagcgcaaagaattatgcaagcttcgtgagaaactggaacagaaaaaa
aaggctctacaggagaccattgcaaacagaaagaagttcttgtcaagtctcccgtcacac
ctaaaatcactcaagaaagcatccttgccggtgcagcaccaacttggagttctgcacaca
aaaaagttgaagcagttgcaatatgcagagttgcttcctccgcctctctatgttatttat
tcacagctaatggcccaaaaagaagcctttggagaaaatgtagagctggagattgttggt
agtgtgaaggacgctcaagctgttgcccgtcagcaagcaaataaagacactggtgtgtct
gccagcttagagagctctaaagttgatgatgatatagatgaggaagatgatggacaacgg
agaagaaagcgtcccaaaaagatacccagcaatgaaagtctggagcaggctggaatttat
caaactcacccacttaaagtcacacttcatatacacgatgatgagatacaatctacaaaa
cttgtcaccttgaagtttgagtacttaattaagttgaatattgtgtgtgttggagttgaa
ggctctcaagagaatcctgataatgacatcttatgcaatttatttccggatgacacaggc
cttgagcttccacgccagtcagctaagctaattgatcattctattgtgttcgatgaaagg
agaacgtcacgaccatacaagtgggcccagcatctggcaggcatcgactttttacctgag
gtgtcaccatcacttaggggttttgagacttcaaatgatgaaacagcaaaacacgctgct
gttatctctggtctatcattgtatcggcagcaaaatcgggtgcaaacggttgtgcaacgg
attcgtgctcggaaaaaggctcagctggctctagcggagcagttcgactctctaatgaac
ctaaactggccagttctagccagtagaagtgttccttgggcctcacacgatcctcgctgt
agtttgcatgcatgggtccctctttgtccatctcctagtcaggtttcaacattggctgtc
gcagaaatagaacaagttcagcttcctacagaagttgtggtggacgggaaatctgcctct
tcaaaagaagaggtagaaagcacgagggaggatggggagcttccatctttagttccagtc
acttctataaatgatactaatgtcactccaaataaaagaatcaattttgatccgtccaca
aagctggctttcatttcaaagagtgccagctctccaattataaaggggaagtcaccaagt
tttaagaaatacggagatgatgcagatcttattctggaatcagatagtgaagtggatgat
actgtgcaggttgggcaggatagtaataatacccctggacttgctgggttcagtgacaag
tcatgggtggactgcaaggttcaggaatattgtctcgttctgacaagaaagatggataac
gaggaaagaaaaatgaaattggaatccaagatcaaaatcagcaaggagtatccacttagg
cctcctcttttcacattgagcctttatgaggcgatacagtcggagaacttttctatggtg
gatagttctgtgtggtacaatgaacttcgcagcatggaagcagaggtcaatgctcacata
ataaacgctatacctgcagatgaagaaaacttagtcttggctcatcaggttcgttgtctt
gccttgctgtttgacttttatgctgaagatggggagtcatcgtctgagaagagaaagagc
acttctgtgattgatgttggtttgtgcaaacctatgactggtcagcttgtcgctcgatca
tttagaggtagagatcataggaagatgatctcatggaaagacagctcttgcacccctggc
tatccgtactaa

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