Nicotiana tabacum (common tobacco): 107794392
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Entry
107794392 CDS
T04643
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107794392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107794392
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107794392
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107794392
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107794392
NCBI-ProteinID:
XP_016472361
UniProt:
A0A1S4A717
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Position
Un
AA seq
593 aa
AA seq
DB search
MLQRRLFCTRISKTILQSNPGHNHSKWSVKQVTKSSFSATLEEISTFISDSDFIAVSLKN
TGAYSAPWQRILPIDTAHTAYLKAKYAAERFQVLQFAVCPFSIRGSKLIVHPYNFHLFPR
DELKIGMPSYSFSCQSSYLTSMARQGFDFNACIYDGISYLSRSQESAAIDRIGNASHITR
KVQSPSGHTVADSVFAERIKSRVKHWISSCRDTNKKPEDALITFILGQTLKDFVDVIPLL
TPAKGGMTMSIRVVLTSSEEDKILLQKELQNEEKEHNKRIRGFREVIDLISASQKPVVVH
NSLNDFTFVHSKFLAPLPPTLDEFKSSLCEVFPNVLDVTHLMKEISPLKKVNNLPASISY
LKQRFFAPVDMEISNQAAEATEVKTLGHDVLKISELFAKLYSILKIAPKAPEAAEGHLPD
AIECYINLFNPCFASSHGLADEGVSVWTDNTRKISIKNLVFLWGFRGGTSAGQLKSLLYG
SHEVFHNEFDVRLVDKSCAVVVFGNPGFSEVLLQLMDSGGICTSTLKEMLADGLTAAGYE
AYQKVCELGLWEADLASSFERALEENDSFSEAHSQELPGICWNNDEMINLDDL
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaggcgcttattttgcacgaggatttcgaaaaccatcctccaatcaaacccc
ggacataatcatagcaaatggagtgtaaagcaagttaccaagtccagtttctcagcgaca
ttagaagagataagtactttcatctccgactctgatttcatcgccgtctcattgaagaat
actggggcctactctgcaccctggcagcgtattctgccaattgacaccgcacacaccgcc
tatctcaaagccaaatatgccgccgaacggtttcaggtccttcagttcgccgtttgccct
ttctccattagaggttccaagctcatcgttcacccatacaactttcatttgttccctcgt
gatgagttaaaaatagggatgccttcttatagtttctcttgtcaatcatcatatttgacc
tctatggctcgacaaggttttgatttcaatgcctgcatatatgatggcatatcatattta
tccagatcgcaagaatcagctgcaatagatagaattggaaatgcatcacatattacccgt
aaagtgcaatctccatcagggcatacagttgctgattccgtatttgcagaaaggatcaaa
tctcgagttaagcattggataagttcttgcagagacaccaacaagaagcctgaagatgct
ttaatcacttttatattgggtcagacactgaaggattttgttgatgtcatacctttacta
accccagcaaagggagggatgacaatgtctattcgagttgttttgacaagttcagaagaa
gacaaaattcttttacagaaggaacttcaaaatgaggagaaggagcataacaagcgcatt
cgtggctttcgagaggtgatcgatttgatttccgcttctcagaaacccgttgttgtccac
aactctcttaatgattttacctttgtccattccaagttcttagctccattgccaccaacg
ctggatgaattcaaaagttcattatgtgaggtcttcccaaacgtacttgatgtcacccat
cttatgaaggaaatcagccctctgaaaaaagtgaacaatttgcctgcaagtatctcatat
ttgaaacaaagattttttgcccctgttgatatggagatatctaaccaagcagctgaggcc
acggaagtgaagactctgggacatgatgttttgaagataagcgaattgtttgcgaagctg
tactccatactgaaaattgctccaaaagctcctgaagctgctgagggccatttgcctgat
gcaattgaatgctacataaacttgtttaacccttgctttgccagttctcatggtcttgct
gatgaaggtgttagtgtgtggactgacaatactagaaaaattagtattaagaatctggtt
ttcctatggggattcaggggtgggacatctgcaggacagctgaaaagcctcctatatggt
tcacatgaagttttccataatgaatttgatgttaggctagtggataaaagctgtgctgta
gttgtttttgggaaccctggcttttcggaagtcctgttgcagctaatggattctggaggt
atctgtactagtaccctgaaggagatgctggcagacggcctgacagccgcaggttatgag
gcataccaaaaagtctgtgagttaggtctatgggaagcagatttggccagttcattcgaa
agggctttggaagaaaatgatagcttctcagaagctcactctcaggagcttccggggata
tgttggaataatgatgaaatgattaacctggatgacctttaa
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