Nicotiana tabacum (common tobacco): 107794494
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Entry
107794494 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 27 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107794494
03009 Ribosome biogenesis [BR:
nta03009
]
107794494
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107794494
Spliceosome [BR:
nta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107794494
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
90S particles
Helicases
107794494
Pre-60S particles
107794494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
Motif
Other DBs
NCBI-GeneID:
107794494
NCBI-ProteinID:
XP_016472475
UniProt:
A0A1S4A775
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All DBs
Position
4:29087817..29094962
Genome browser
AA seq
566 aa
AA seq
DB search
MAEVEENPNAVVAEEESIKKKRKRNRDKKNKMVTEKETKKAEVSEDREEEENDVEEQHNE
LKEEIKKEMKSGSGIMTTELFSSLEISEPTMKSINDMGFQHMTQIQARAIAPLLEGKDVL
GAARTGSGKTLAFLIPAVELLYNVRFTPRNGTGVIVICPTRELAIQTHAVAKDLLKYHSQ
TLALVIGGSARRAEADRIAKGANLLVATPGRLLDHLRNTKGFIYKNLKCLMIDEADRILE
ANFEEDMQQIIKLLPKQGRQTALFSATQTKKVEDLARLSLDKPVYIDVDDGRRRVTNEGL
QQGYCVVPSAKRFLLLYSFLKRNLSKKIMVFFSSCNSVKFHSELLRYIKIECCDIHGKQK
QQKRTSTFFEFCEAKTGILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGE
GAKGNALLFLIPEELQFLKYLKAAKVPVKEYEFDHKKVANVQSLLEKLVANNYYLNQSAK
EAYRSYILAYNSHSMKEIFNVHRLDLQAVACSFCFSNPPKVHLNIDSNASKFRNKKRKVE
GSRNGFSENNPYGKKGSDDTRQFVRY
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggtagaagaaaaccctaatgcagtagttgcagaagaagagtcaattaagaag
aagagaaagagaaatagagacaagaagaataaaatggtcacagaaaaagagacgaagaag
gcagaagtaagtgaggacagagaagaagaagagaatgatgtagaagagcagcataatgaa
ctgaaggaggagattaagaaagagatgaagagtgggtccggtattatgactacggagttg
ttttcttctcttgaaatttctgagcccactatgaagtccatcaacgacatgggctttcag
cacatgactcagatccaagccagggcaattgctcctcttctggaaggcaaagatgtcctt
ggagctgcaagaactggttctggtaaaacacttgcatttctgataccagccgtggagttg
ttgtataatgtccgttttacacctcgtaatggaactggggttattgtcatttgcccaaca
agagaactggctatacagacgcatgctgtggcaaaggaccttctcaagtatcattcgcag
actctcgccttggttattggtggttcagcaagaagagcagaggcagatcgtattgcaaaa
ggggctaatctcttagtagccacccctggtcggcttcttgatcatcttagaaataccaaa
ggcttcatttataagaacctaaagtgtctcatgattgatgaggctgataggattttggaa
gcgaactttgaggaagacatgcagcaaatcattaaacttctaccaaagcaggggaggcag
actgctctcttttcagccacacaaacaaaaaaggttgaggaccttgctcgcttatctttg
gacaaacctgtctacattgatgtggatgatgggaggaggagggttacaaacgaagggctg
caacaaggatactgtgttgtcccaagcgctaagagatttcttctcctttattcattcttg
aagaggaacctgtcaaagaaaataatggttttcttctcgtcttgcaactctgtcaagttt
cattcagagctacttcgctatatcaagattgaatgctgtgatattcatgggaagcaaaag
cagcaaaaacgaacttctaccttttttgaattctgtgaagccaaaacaggcatcctgtta
tgcacggatgtcgctgcacgtggtcttgatattcctgctgtggattggattgtgcagttt
gatccccctgatgaacccaaggagtatatacacagagttggtcgaacagcacgtggggaa
ggtgctaaaggaaatgcattactattcttgattccagaagagttgcagtttcttaagtac
ctcaaggcggcaaaagtgcctgtaaaagaatatgaatttgatcataagaaggtggccaat
gtgcagtcactcctggaaaaattggtcgcaaacaactattacttgaaccagtcagctaaa
gaggcatataggtcctatatactagcatataattctcattccatgaaggaaatattcaat
gttcaccgacttgatctacaggctgtagcttgttcgttctgtttctctaatcctccaaaa
gtacacctcaacatagatagcaatgcatccaaattcaggaacaaaaagcgtaaagttgaa
ggaagccgaaatgggttcagtgagaacaatccttacggaaagaaaggaagtgacgataca
aggcagtttgtaagatattag
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