Nicotiana tabacum (common tobacco): 107794986
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Entry
107794986 CDS
T04643
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107794986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107794986
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107794986
mRNA degradation factors
5'-3' decay
Decapping complex
107794986
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Other DBs
NCBI-GeneID:
107794986
NCBI-ProteinID:
XP_016473028
UniProt:
A0A1S4A8X7
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Position
11:128206762..128217482
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AA seq
814 aa
AA seq
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MERSNSRDIKGLTSSSSSSISDSALFDASQYAFFGLDIAEEVELSGLEDEQENNDLVVGG
GLGDDEIHEYHLFEKDEGSVLSSLSDLDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSR
ESSSAAEWAKEADFHDWFDQHLSDTECYQESKKWSSQPHISAVHLAESKPLYRTSSYPEQ
PPQLQHYSSEPILLPKSAFTSFPPPGGRSQPSPHGLSRQNMSSLSAGPQSPYSTANLSSL
SNSNMHLTGLPHGLHFGGNIPQLNPAGLSLNTRLQSQWSSHAGLIHGDHSGLLQHQFPHQ
SGLLSPQFMSPQQLQQQRLHLSVQPSLAHFSALRSQLFSSFPSPSHLGKYGMADLRDPRS
KPSHKVRQNVHFSKQSSDAASHKSESYVPQFRSKYMTGDEIESILKMQHSAAHGNDPYVD
DYYHQARLAKKASESRSKHRFCPNKEQSSRSRNSTESQPHLHVDAHGRVSFSSIRRPRPL
LEVDPPGFVCIEGSGEQKISERPLEQEPMLAARITIEDGFYLLTEVDDIDRLLQFSQPQG
GAQLKRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISRYLQ
LLLPGGELVRIVCMAIFRHLRFLFGGLPPDPEAAETITDLAKIVSKCVSGMDLNSLSACL
AAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATHLLTNSQAANSFSMPNPALWQASFD
AFFGLLTKYCLSKYGSIMQSILAQSQSDAEIIGPEAARAVSREMPVELLRASLPHTDEHQ
RKLLLNFAQRSMPVTGFNAHGGSSGHINPESVSC
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccaatagcagagatattaagggcttgacgagctcctcctctagctccatc
tcagatagtgcgctcttcgatgcatcacagtatgcattctttgggctagatatagcagag
gaagttgaattgagtggtttagaggatgaacaagagaacaatgatctggttgttggaggt
ggattaggtgacgacgagatacatgagtatcatttatttgagaaggacgagggatcagtc
ttgagctctttatcagacttggatgatctagcaacaacattttcaaagttgaacagaaat
gtaactggaccaaggcatccgggtgtcattggtgaccgtggatcaggttcattttcaagg
gaaagttcctctgcagctgaatgggcgaaagaagcagactttcatgattggtttgatcag
catttatctgacactgaatgttaccaggaaagcaaaaaatggtcctcacagccacatatc
tctgcagtgcatcttgcagagtcaaaaccattgtatagaacatcatcataccctgagcaa
cccccacaacttcagcactactcaagtgaacccattttattacccaaatcagctttcacg
tcttttcctccccctggtggtagatctcaaccctcaccacacggcctttcgcgacagaac
atgtcatctctttctgctggacctcagtctccctattcgactgctaatctctcttctttg
tcgaactctaatatgcatttgactggcttgcctcatgggctccactttggtggaaacatc
ccacaattgaaccctgctggtctctctcttaataccaggttgcaaagccagtggagcagc
catgcaggacttattcatggggaccattctggtctcttacagcatcagtttcctcatcaa
agcggtttattatccccccagttcatgtccccgcagcagctgcagcagcagagactgcat
ctttcagttcagccgtctttagctcatttttccgcactaagatctcaattgtttagttcc
ttcccttcaccatctcatctaggaaagtatggaatggctgatttgagagatccacgatct
aagccatcacacaaggttagacaaaatgtgcacttttctaaacaaagctctgatgctgct
agccacaaaagtgaaagttatgtgccacagttccgatccaagtatatgactggtgatgaa
atagagagcatcctgaaaatgcagcattctgcagcacatggcaatgacccatatgtagac
gattactatcaccaggcccgcctggcaaagaaagcatccgagtcgaggtcaaaacatcgt
ttctgcccaaataaggagcagtcttctcggtcacgtaatagcacagaatcacagccccat
ctacatgttgatgctcatggacgggtttcattttcttccatccgcaggcctcgtccactt
cttgaagttgatccaccgggctttgtttgcattgaaggcagtggtgaacagaagatatcc
gagagacctttggaacaggagccaatgcttgcagctagaattactatagaagatggtttc
tatcttctcactgaggtagatgacattgacaggctccttcagtttagtcagccccaaggc
ggcgctcagctcaagcggaagcggcagatcctgctggaaggcatggcagcctcacttcaa
ctagttgacccacttggcaaaagtggcagttctgttgggcttaccccaaaagatgacatt
gtatttctgtggttagtgtctcttcccaagggccgaaagctaatctcaaggtatcttcag
cttcttctacctggtggcgagcttgtcagaatagtttgtatggcaattttccgccatttg
aggtttttatttggcggccttccacctgatccggaagcagctgagaccatcactgatctt
gcaaaaatcgtctcaaaatgcgtcagtggcatggaccttaattcactcagtgcttgtctt
gctgctgtggtttgttcctcagaacaaccacctcttcgccctcttggaagccctgctgga
gatggagcctccattattctaaaatctgttcttgaaagggcaactcatctgttaactaat
tctcaggctgctaacagcttcagcatgcctaatcctgccctttggcaggcatcttttgat
gccttttttggtttgcttacaaagtattgtctgagtaagtatggcagtatcatgcaatcc
atactagcacagtctcagtcagatgctgaaataattggtccagaggctgcaagagccgta
agcagagaaatgcctgtggaacttttacgtgctagtcttccacatacagatgagcaccaa
aggaaactgttgttaaattttgctcagcggtccatgcctgttactggattcaatgctcat
ggtggaagcagtggacatataaatcctgaatctgtaagctgttag
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