Nicotiana tabacum (common tobacco): 107796188
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Entry
107796188 CDS
T04643
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107796188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107796188
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107796188
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107796188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP40_S1
RRP4_S1
CHASE5
Motif
Other DBs
NCBI-GeneID:
107796188
NCBI-ProteinID:
XP_016474420
UniProt:
A0A1S4ACM3
LinkDB
All DBs
Position
Un
AA seq
200 aa
AA seq
DB search
MTKAMETETQEVVTPGQVLGKASQLKAGKGASVSTEHDTVYASLTGFRSLIPPPSDSPDQ
RPTVEVTGHKSHGAVPQPGSIVFARVTKVMPRMASADIVCVDSKSVREKFTGIIRQQDVR
ATEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWT
EMQCPLTGQVEQRKVAKVEA
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagcaatggaaactgagactcaagaggtggtgacgccgggacaagtattgggt
aaagcgtcacagttgaaagccggaaaaggagcttccgtttcaaccgaacacgacaccgtt
tacgcctctctgaccggtttccgttctctcatacctccgccttccgactctcctgaccag
agaccaacagtggaagttactggtcataagtcccatggagctgttcctcagcccggttcc
attgtttttgctagagtcactaaggtgatgcctagaatggcttcagcagacatagtttgt
gttgattccaagtctgtgcgtgagaaattcaccggcattattaggcaacaggatgtgaga
gcaactgagattgacaaagtcgacatgcatttgtccttccgcccgggtgatattgtccgt
gcattggtgctatcacttggagatgcacgggcatattatctgtcaactgcaaaaaatgag
ctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagctggaca
gaaatgcagtgccctctaacaggtcaagtagaacagagaaaggtggccaaggttgaagct
tga
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