Nicotiana tabacum (common tobacco): 107797839
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Entry
107797839 CDS
T04643
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107797839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107797839
Spliceosome [BR:
nta03041
]
Complex A
U1 snRNP components
U1 related factors
107797839
Complex B
107797839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
107797839
NCBI-ProteinID:
XP_016476247
UniProt:
A0A1S4AHS7
LinkDB
All DBs
Position
Un
AA seq
1034 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQFRPAVSTQQGQPFASSISASPQYRPVG
QTSNAGMPPGHHSQIPQFSQPMQQFPPRPNQPGHGILLSQAIQMPFIQSSMPQPQQVIPP
LNSHMPGVSGAGNPFSSSYTVQSSSQMHVPSFPSGGQPWLSSGSQNTPVTAPTLLTNQQL
SAIAPSVPAGTASPQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTV
WKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEKSAGQVVQTGASTTSGVQVTAAV
TSTEQPSAVTPVSFTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSS
GVSSPAVSGSTGSAALANASQTQMSGFENLSPQVSSSLSGASIQDIEEAKKGMAVAGKVN
VVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTL
GERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDE
RFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRQNRLEYRHFLETCGFIKVDTQWRKV
QDLLEDDERCLRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMME
EQITAGTLTAKTSWRDYCQMVKESVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIR
VKDVVKSEKITISSTWTFEDFKATILEGIGSPSIHDVNLQLIFEDLIERAKEKEEKETKK
RQRLAKDFTDKLSTIKEITASSSWEECKELVEDTSEFRAIGEETISRAVFEEYVAWLQEK
AKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKERDKEKERGNERATKDEADSE
SMDVTDNYEPKEERKREKDRERKHRKRHHISNDEVTSDKDEKEEPERDKERKHRKRHHSS
NDELASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGGY
EELEDGELGEDGES
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccgccatctggtccacagcctctttggcctccttcagttggatcc
acaccacctcaaggttttggttcatcatttcccatgcaatttcgacctgctgtatcaaca
cagcaaggccagccctttgcttcatcaatttcagcctctccacagtatcgccctgttgga
caaacatcaaatgctggaatgcctcctggtcatcatagtcaaataccccagttttctcaa
ccaatgcaacagtttcccccgaggcccaatcagcctggccatggtatacttttatctcag
gcaattcagatgccatttatccaatcaagtatgccacaacctcaacaagtcattccgcct
ttgaatagtcacatgcctggtgttagtggtgctggaaatccattttcatcatcatatacg
gttcaatcgtcatcccaaatgcatgttccttctttcccttcgggggggcaaccttggctg
tcatctggaagtcaaaacacaccagtgactgcccctactttactgaccaatcagcaattg
tcagctatagctccatccgttccggcgggcacagcttcaccacagaatgcgtctgactgg
caagagtatgaagctgctgatgggagacgatattactacaataaaattacaaagcaatcc
agctgggagaagcctttggagctgatgacacctttagagagagctgatgcgtcgacggta
tggaaagaattcacaactgcagatggtcgaaagtattactacaacaaagaaacaaagcag
tctaagtggacaatacctgaggaactaaagttggctcgtgaactggcggaaaaatctgct
ggtcaagtagttcagaccggagcaagcacaacttctggtgtgcaagtcactgcagctgta
acttcaacagaacaaccatctgctgtcaccccggttagcttcaccccttcttcaacggtt
tctggagtagcttcaagccctgttccagttacatctgctgtttctgatcatgcttcacct
ctggtggtttctggatcatcagccattcctgctgtgacccctgcgatgccaagttcatct
ggtgtctcttcacccgctgtttcagggagtacaggatctgctgctctagctaatgccagt
cagacacaaatgagtggctttgaaaatttatctccgcaagtttctagttctttaagtgga
gcttctattcaggatattgaggaggcaaagaagggcatggcagttgctgggaaggttaat
gtggtacctgcagaggagaaaacaacagaagaagaaccttttctatatgcgaccaagcag
gaggctaaaaatgcgttcaaagcgctgctagagtttgctaatgttgaatctgattggaca
tgggagcagacaatgcgagtaataatcaacgataagcgatatggcgctctgaaaactctt
ggtgagcggaaacaggcattcaatgagtacttgatgcaaaggaagaaacaggaggctgag
gagaggcgccatagacaaagaaaggcaaaagaagaattcacaaagatgttagaggagtcc
aaggaactcatttcatctactagatggagtaaggcagtaaccatgtttgaggatgatgaa
cggttcaaggccgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtg
gatctgcagaaaaaggagagggcaaaggctcaagaggagtatcgacaaaatagattggag
tacagacattttttggagacttgtggctttatcaaggtagatacccagtggcgcaaagtc
caagatcttctggaagatgatgaaagatgtttgcgccttgaaaaaatcgatcgtttagat
attttccaggaatacatccgtgacctggagaaggaggacgaagaacagagaaaattgcaa
aaggaacaattgaggcgcacagagcgtaagaaccgggatgcatttcgaaagatgatggag
gagcaaatcactgcaggcacgcttactgcgaaaacatcttggcgtgattattgtcagatg
gttaaggagtctgtggcttatcaggctgttgcatcaaacacttctggttcgacaccaaag
gatttgtttgaagatgtcgttgaagagttggaaaaacagtaccatgaagacaagattcga
gtaaaagatgtagttaagtcagaaaagatcacgatctcatcaacatggacattcgaagac
tttaaagctactattttggaaggaattggttccccatccattcatgatgttaatctacag
ctcatttttgaggatctaattgagagagcaaaggagaaagaagaaaaagaaactaaaaag
cgtcaaaggcttgcaaaagatttcactgacaagcttagtaccattaaggaaataactgct
tcctctagttgggaggagtgcaaagaacttgtggaggacacctcagagttcagagctatt
ggtgaagaaacaatctcaagggcagtctttgaggaatacgttgcatggttgcaggagaag
gcaaaggaaaaagaacgcagacgagaggaggaaaaggccaaaaaggagaaagaaaaagag
gaaaaagagaagagaaaggataaggagagaagggaaaaagagagagagaaggaaaaagag
cgtgacaaggaaaaagaaaggggaaacgaacgagcaacaaaagatgaggcagatagcgag
agtatggatgttacagataactatgagcccaaagaagagagaaaaagagaaaaagacaga
gagaggaaacatcggaagcgacaccatatctctaacgatgaggtgacttctgacaaggat
gagaaagaggaacctgaaagagacaaggagaggaaacaccggaagcgacaccatagctct
aacgatgagctggcatctgacaaggacgagaaagaggaatctaaaaggtcccgccgacat
agcagtgatcgtaaaaagtcaaagaagcttgcacactcacctgaatccgatggtgaaagt
cggcataaaagacacagaagagatcatagggatggatcacgtcgaaatggtggtggttat
gaagagttagaagatggggagcttggtgaagatggagaaagttga
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