Nicotiana tabacum (common tobacco): 107799000
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Entry
107799000 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107799000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107799000
03041 Spliceosome [BR:
nta03041
]
107799000
03009 Ribosome biogenesis [BR:
nta03009
]
107799000
03016 Transfer RNA biogenesis [BR:
nta03016
]
107799000
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107799000
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107799000
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107799000
Complex C
U4/U6.U5 tri-SnRNP related factors
107799000
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107799000
Transfer RNA biogenesis [BR:
nta03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107799000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DksA_N
Motif
Other DBs
NCBI-GeneID:
107799000
NCBI-ProteinID:
XP_016477535
UniProt:
A0A1S4ALQ0
LinkDB
All DBs
Position
Un
AA seq
811 aa
AA seq
DB search
MESSSPTAGKRKQPEENSDVNSVQKLNSSSSKRVTLARTCVHEVAVPTNYTSANDETIHG
TLSNPSYNGEMAKTYPFKLDPFQEVSVACLERKESVLVSAHTSAGKTAVAEYAIAMAFRD
KQRVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSE
VIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICNIHK
QPCHVVYTDFRPTPLQHYMFPVGGSGLYLVVDENEQFREENFVKMQDSLAKQKSGENKST
ANAAKVRGRIARGGSSSGVSDICKIVKMTMEKKFQPVIVFSFSRRECEQHAMSMLKLDFN
TEEEKEVVNEVFRNAMACLSEEDRNLPAIALMLPLLQRGIAVHHSGLLPVIKELVELLFQ
EGLIKALFATETFAMGLNMPAKTVVFTNVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR
GICIIMIEEQMEMNSLKDMVLGKPAPLVSTFRLSYYTLLNLMSHAQGQFTAEHVIKNSFH
QFQYEKALPDIGKKVSKLEEEAEMLDASGEAEVAEYHKLKLEIAQREKKLMAEITRPERV
LHFLLPGRLVKVWEGGKDWGWGVVVNVVKKPPAPSGSLPAALSASRGTGYIVDTLLHCSL
ASGDNGSQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPADLRPLEARQSILLAVQ
ELQKRFPHGLPKLNPVKDMGFEDPEFVDIVNQIEELEKKLFAHPLHKSQDEHQLKSFQRK
AEVNHEIQQLKSKMRDSQDGLDLALQGKEKM
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttcttctccgactgcagggaaaagaaagcaaccggaggagaactccgacgtg
aactcagtccagaagctaaattcatcatcctcaaagagagtcactttagctcgaacctgc
gtccacgaggtagcagttccaactaattacacttcagccaacgacgaaacaatccatgga
accctctcaaatccttcgtataatggagaaatggcaaaaacctacccgtttaagctcgac
ccatttcaggaagtatccgtcgcgtgcttggaacgtaaagaatcagtcctcgtatccgca
catacctccgctgggaaaacagctgtcgccgagtacgcaatcgcaatggcatttagggat
aagcaaagggttatttacacttcacctttaaaagctttgagcaatcagaagtacagggag
ttaagccacgagttttctgatgttggtttaatgacgggtgacgtcacgctttcgccaaat
gcaagttgtttggtgatgacaacggagattttaaggggtatgctttatagaggttctgag
gtaataaaggaagtagcttgggttatatttgatgagatacattatatgaaagatcgcgaa
agaggggtagtttgggaagagagtattatattcttgccaccggctattaagatggtgttc
ctttcggctaccatgtcgaatgctactcagtttgctgaatggatttgtaatattcataag
cagccttgtcatgtggtgtatactgattttcggcctacccctttgcagcattatatgttc
cctgtgggtggttctggattgtatcttgtggttgatgagaatgagcagtttagggaggaa
aattttgttaagatgcaggatagtcttgcaaaacagaaatcgggggaaaataagagtact
gcaaatgctgctaaggttagaggtagaattgctagaggtggctcttcttctggtgtatcg
gatatctgcaaaattgtcaagatgaccatggaaaagaagtttcagccagtcattgtgttc
agttttagtagaagagaatgtgaacaacatgcaatgtctatgctcaagcttgattttaat
accgaagaggagaaggaagtagtgaatgaggttttccgtaatgcaatggcttgcttgagc
gaggaagatagaaacttaccagctattgcattgatgttgcccctacttcagcgtggaatt
gctgttcaccattctggcctgcttcctgttatcaaggaactcgtggaacttctcttccaa
gaaggactcataaaggctctttttgcaacagagacatttgcaatggggctaaacatgcct
gcaaaaactgttgtctttaccaatgtaaagaaatgggatggtgatagtcatcgttacatt
ggatctggtgagtatatacagatgagtggaagagcaggacgtcgtggcaaagatgaccgt
ggtatttgtattatcatgattgaagagcagatggagatgaatagcctcaaggacatggta
ttgggtaaaccagctccattagtcagcacatttaggctgagttattacacacttttgaat
ttaatgagtcatgcccaaggccaatttactgctgagcatgttatcaaaaactcatttcac
cagtttcagtatgaaaaggcgttacctgacattggaaagaaggtctctaagctggaagaa
gaagctgagatgcttgatgcatctggggaggctgaggttgcagaatatcataaactaaaa
cttgagatagcacaacgtgaaaaaaaacttatggctgaaataacacggcctgaaagggtt
ctccattttcttcttcctggtaggctggtgaaggtatgggaaggtggaaaagattggggt
tggggtgttgtagtcaatgtggtgaagaagcctccagcaccgtcaggttctttgcctgct
gcactctctgcttcacgtggcactggctatattgttgataccctacttcattgctctctt
gcttctggtgacaatggttctcaacccaaaccatgtcctcctcgtccaggggagaaggga
gaaatgcatgtggttcccgttcaattacccctgatttcttccctcagtaagcttagaata
tctgttcctgcggatcttcggccactggaagcaaggcaaagcatcctgcttgctgtacag
gagcttcagaaacgatttcctcatggcctcccaaagcttaaccctgtaaaggacatgggt
tttgaagatcccgaattcgttgatatagtgaaccagattgaagaactagagaaaaaattg
tttgctcacccactgcacaagtcacaagatgaacatcaacttaagagtttccagagaaag
gcagaagtgaaccatgaaattcaacaactcaagtcaaaaatgcgtgattcacaggatggc
ttagacttggcgttgcaaggaaaggagaagatg
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integrated database retrieval system
