Nicotiana tabacum (common tobacco): 107801111
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Entry
107801111 CDS
T04643
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107801111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107801111
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107801111
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
107801111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107801111
NCBI-ProteinID:
XP_016479880
UniProt:
A0A1S4ATI6
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Position
Un
AA seq
288 aa
AA seq
DB search
MVGLSIGEKNFIKGGIAQDMRNDGRKRLTYRPIYVETGVIPQANGSARIKLGPTDVIAGV
KAELGKPSQAHPDQGKIYIHVDCSPTAEPSFEGRGGEELSAELTAALEGCLLGGKSGAGA
GIDPSSLSIKEGKVCWDLYIDCLVISSGGNLLDALGAAIKAALSNTGIPRVQVREAASSD
EQADVDVSDEEFLQFDTSGIPVIVTLIKVGRHYIVDATSEEESLMNSAVSISVNRQGLVC
GLTKRGGIGLDPSVILDMISVAKHVSEQLINKLDSEIEAAEKAHEDEP
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggtagggctatctattggagaaaaaaactttattaagggtggtattgcccaggatatg
cgcaatgatggtagaaagcgactaacctatcgaccaatttatgtggaaacaggtgttatt
cctcaggcaaatggatctgcaagaatcaagttgggtccaactgatgttattgccggtgtc
aaggcggaacttggaaaaccaagtcaagcgcatcctgaccaagggaaaatttatattcac
gtcgactgcagtcccacagcagagccatcgtttgagggcagaggaggcgaggaattgtcc
gcagaactcacagctgcacttgaggggtgtcttttgggtggtaaaagtggagcaggggct
ggaatagatccgtcgtctctctcaatcaaagaaggaaaagtatgttgggatctgtatatt
gattgccttgtcattagttctggcgggaatcttctcgacgcactaggtgctgcaatcaag
gctgcactgagcaatacgggtattccaagagttcaggttcgtgaagctgcttcatccgat
gagcaggcagatgtggatgttagtgatgaagaatttctgcaatttgacaccagcggaata
ccagtcatagttactttgataaaggttggaaggcactacattgtcgatgcaacttcagag
gaggagtccctaatgaactcggctgtttctatttctgttaatagacaagggttagtatgt
gggttgaccaaacgaggaggcatcgggttagatcctagtgtcatacttgacatgatatct
gtggcaaaacatgtaagcgagcagctaatcaacaagcttgattcggagatagaagccgct
gaaaaagctcatgaagatgaaccatga
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