Nicotiana tabacum (common tobacco): 107801795
Help
Entry
107801795 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107801795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107801795
03041 Spliceosome [BR:
nta03041
]
107801795
03009 Ribosome biogenesis [BR:
nta03009
]
107801795
03016 Transfer RNA biogenesis [BR:
nta03016
]
107801795
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107801795
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107801795
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107801795
Complex C
U4/U6.U5 tri-SnRNP related factors
107801795
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107801795
Transfer RNA biogenesis [BR:
nta03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107801795
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
FlxA
Motif
Other DBs
NCBI-GeneID:
107801795
NCBI-ProteinID:
XP_016480671
UniProt:
A0A1S4AVP1
LinkDB
All DBs
Position
Un
AA seq
1023 aa
AA seq
DB search
MPCGSQLYHRVFVVKILRREEGLSQKELEMESSSPTLGKRKLEEEHEAAAASQESASKRR
NLAAVRTCVHEVAVPSHYTSTNDESLHGTLSNPIYNGQMAKNYPFKLDPFQEISVACLER
KESVLVSAHTSAGKTAVAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSHEFSDVGLMT
GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL
PPEIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVD
DNEQFREDNFLKLQDTFTKQKLRGSANGKASGRIGKGGSASGSVSEIYKIVKMIMERKFQ
PVIIFSFSRRECEQHAMSMTKLDFNTEEEKEAVEQVFRSAVACLSEEDRNLPAIELMLPL
LQRGIAVHHSGLLPVIKELVELLFQEGLIKALFATETFAMGLNMPAKTVVFTSVKKFDGD
SHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMDNLKDMALGKPAPLVSTFRLSY
YTILNLMSRSEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAATLDASGEAEVAG
FHKLKLEIAQFEKKLMAEITRPERVLYFLLPGRLVKVREGGKDWGWGVVVNVVKKPPAAL
GSLPAALSASRGTGYIVDTLLHCSLGSSENGSRPKPCPPRPGEKGEMHVVPVQLPLISSL
SKLRISVPSDLRPLEARQSILLAVQELEKRFPEGLPKLNPVKDMGIEDPEVVDMVNQIEE
LEKKLFSHPLHKSQNEHQLKCFQRKAEVNHEIQQLKSKMRDSQLQKFRDELRNRSQVLKK
LGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLNHHQVAALASCFIPGDRSTE
QILLRDELAKPLRQLQDSARKIAEIQNECKLEINVDEYVDAAVRPFLMDVIYCWSKGASF
AEVIQMTDIFEGSIIRLARRLDEFLNQLKAAAHAVGETDLENKFGAASDSLRRGIMFANS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgccctgcggatctcaactttaccaccgtgtgtttgtggtaaagattttaagacgggag
gagggtttaagccaaaaagagttggaaatggagtcgtcgtctccaacattggggaaacgg
aaactagaggaggagcacgaagcagcagcagcgtcacaagaatctgcttcgaaaaggcga
aatttggccgcggtcagaacctgcgtgcacgaggtagcagttcccagtcattacacttca
accaatgacgaatcacttcacggtaccctctcaaaccccatctataacggtcaaatggcc
aaaaattacccatttaagctggacccatttcaagaaatctccgtagcatgtttagaacga
aaggaatcagtcctcgtatcagcacacacttccgctggcaaaactgcagttgcagagtat
gcaatcgctatgtcttttagggataagcagagagtaatttacacttcacctttaaaagcc
ttgagcaatcagaaatacagagagctgagtcacgagttttctgacgtgggtttaatgacc
ggtgacgtcactctctcgccgaatgcgagttgtttggtgatgacgacggagattttaagg
ggtatgctttataggggttctgaggtgttgaaagaagttgcttgggttatatttgatgaa
atacattacatgaaagatcgcgagagaggggtagtttgggaagagagtattatattcttg
ccaccagaaattaagatggtgttcctttcggctaccatgtcgaatgccacggagtttgct
gaatggatttgtaatattcataagcagccttgtcatgtggtgtataccgattttcggcct
acacctctgcagcattatgtgttccctatgggtggttctggattgtatcttgtggttgat
gataatgagcagtttagggaagacaatttcttgaaattacaagatacttttacgaagcag
aaactgcgggggagcgccaatggaaaggctagtggaagaattggaaaaggtggctctgct
tctggtagtgtgtccgaaatctacaaaattgttaagatgatcatggaacggaagtttcag
ccagtgattatattcagttttagtagaagagaatgtgaacaacatgcaatgtctatgacc
aaacttgattttaatactgaagaagaaaaggaagctgtggagcaggtattccgtagtgca
gtggcgtgcttgagtgaggaagacagaaacttgccagcaattgaattaatgttgccactg
cttcagcgtgggattgctgttcaccactctggtttgcttcctgttatcaaggaacttgtt
gagcttctcttccaagaaggacttataaaggctctttttgccacagagacgtttgccatg
ggactaaacatgcctgcaaaaacagtagtgtttaccagtgtaaaaaaatttgatggtgat
agccatcgttacattggatctggcgaatatatacagatgagtggaagagcaggacgtcgt
ggcaaagatgaacgtggtatttgcattatcatgattgatgagcagatggagatggataac
ctcaaggacatggctttgggtaaaccagctccgttggtcagcacttttaggctgagttac
tacacaattttgaatctaatgagccggagtgaaggtcaatttactgccgagcatgttatc
aaaaactcatttcaccagtttcagtatgaaaaggccttacctgacatcgggaagaaggtt
tccaagttggaagaagaagctgcaacgcttgatgcctcaggggaggctgaggttgcaggg
tttcataaactaaagcttgagattgcccaatttgagaaaaaattgatggctgaaataaca
aggcctgaaagggttctgtattttcttcttcctggtaggctggttaaggtacgggaaggt
ggaaaagattggggttggggtgttgtagtcaatgtggtgaagaagcctccagcagcattg
ggttctttgcctgctgccctctctgcttcacgtggcactggctatattgtggatacctta
cttcattgctcgctgggttccagtgaaaatggttctcgacccaaaccatgtccccctcgt
cccggggaaaagggagaaatgcatgtggttcctgttcagttacccttaatttcttctctc
agcaagcttagaatatctgttccttctgatcttcggcctttggaagcgaggcaaagtatt
ttgcttgcagtacaggagcttgaaaaacgtttccccgaaggcctcccgaagcttaaccct
gtaaaggacatgggcattgaagatcctgaagttgttgatatggtaaaccagattgaagaa
ctcgagaaaaagctgttttctcatccacttcataagtcacaaaatgaacatcagcttaag
tgtttccagaggaaggctgaagtgaaccatgaaattcaacagctcaagtcaaaaatgcgt
gattcacagcttcaaaaatttcgggatgaacttaggaaccgctcccaagtcctaaaaaag
ctgggtcacattgatgctgatggtgttgtgcaattgaagggacgggcagcctgcttgata
gacactggagacgaacttcttgtgactgaattgatgtttaatggtacattcaatgatctt
aatcatcatcaagttgcggctcttgcaagttgctttatcccaggcgacagatcaactgaa
caaatacttttaagagatgaacttgcaaaaccattacgacagctacaagatagtgcaaga
aaaatagcagagatacaaaacgaatgcaagttggaaataaatgtcgatgaatatgtggat
gcagcagttcgaccattcttaatggatgttatttactgttggtcaaagggtgcatctttc
gctgaggttatacaaatgacggacatctttgaaggtagcatcatacggctggctagaagg
cttgatgaatttttaaaccagttgaaagctgctgcacatgctgtgggagaaacagattta
gagaataaatttggtgcagcaagtgacagtcttcggcgagggataatgtttgcaaattct
ctctatctataa
DBGET
integrated database retrieval system
