Nicotiana tabacum (common tobacco): 107804188
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Entry
107804188 CDS
T04643
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107804188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107804188
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107804188
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107804188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107804188
NCBI-ProteinID:
XP_016483517
UniProt:
A0A1S4B3L8
LinkDB
All DBs
Position
Un
AA seq
721 aa
AA seq
DB search
MKKHCMLKPLSTTLIQISHAPITSFTTRRRALSSSSSSSSSSFALKNVTKSNFESALNDL
RGLVRDADFVAVDLEMTGVTSAPWRDSFDFDRYDIRYLKVKDSAEKFAVVQFGVCPFRWD
SHKQSFLAHPHNFYIFPRQEIPGSNQSYEFLCQTASLDFLAKYQFDFNVCIREGVSYLSR
SQEEEALERISSTFMDESSDSVYGLREDAEFPLIRMADVLFAERMKNTIREWHASLLSKG
SSSSEIKQMSTDPNQRFQMVFFKTRPALALSGFTSRQLRVIKSVTKKHFKDLSYIRVAGE
ATSPQQLIVYTDSNDDKDLLMKEVKEGLRKEAEIKVKSAVGFRHVIDLLSSERKLIVGHN
CFLDMAHIYSKFIGPLPLTVEDYVSSIQKYFPCIIDTKILLNANGVFQQRVNKSSTSLSR
AFVSICPQIALGVKTSGLADRPCVEVEVQVDENRFLNWNSGAKHEAGYDAFMTGCIFAQA
CNHLGIDFTLHVLAGGLPKQTKLQNYINRLYLSWVSGDIIDLSTGKCTTDTSASSNLKSR
YQEISFPSIVLLWGLPSKLKAREIKACIVKVFGPNSISSIYHLDESAVFIQFSKPEMVSK
FLEIKETLSKNSDPISVLHPLSDILNADCTHAANYDVYQQICSSPISKKLFADQAEAVGI
KHKTASSRAEGKKKGNQVFGKENEVRVFDKKVDDMMSSSYGYSETDRSADSFHLDEALAS
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacattgtatgttgaaacctctatcaacaaccctaatccaaatatcccacgct
ccgatcacctctttcactacgcgccgccgcgccctctcttcctcttcctcttcctcttcc
tcttccttcgcgctcaagaatgttaccaaatcgaacttcgaatcagctctcaatgaccta
cgaggtcttgtacgcgacgccgatttcgtcgccgtcgatttggaaatgaccggagtaacc
agcgctccttggagagattccttcgacttcgaccgatatgatattcgttacctcaaagtt
aaggactccgccgagaagttcgccgtcgttcagttcggcgtttgtcctttccgttgggac
tctcacaagcaatcctttctcgcgcatccacataacttttatatattcccacggcaagaa
atccctggtagcaaccaatcctatgagttcctttgccagacagcctcacttgatttcctg
gcaaaataccagtttgatttcaatgtgtgcatacgtgaaggagtctcttatttatccaga
agccaagaagaggaagcactggaacgtataagttcaacattcatggatgaatcatcggat
tccgtgtatggcttgagagaagatgcagagtttccattgattaggatggcagatgttcta
tttgctgaaagaatgaagaacacaataagggaatggcatgctagtttgttaagtaaggga
agcagtagctctgaaattaaacaaatgtcaactgatccaaaccagagatttcaaatggtt
ttcttcaagacccgtccagcccttgcccttagtgggtttacttctcgccagctaagggtg
attaaatcggtcactaaaaagcatttcaaagatctatcctatatcagagtagctggcgaa
gcaacatctccgcagcaattgattgtctatacagattccaatgatgacaaggatctactg
atgaaagaggtgaaggaaggccttcgtaaagaagcagaaataaaggtcaaatctgctgtt
ggatttcgacatgttattgatcttctttcctcggagcggaagttgattgtcggacacaat
tgctttcttgatatggcgcatatatacagtaaattcattggtccactacctttgaccgtg
gaggactatgtgtcttccattcagaagtactttccttgcataattgacaccaaaatactc
ttgaatgcaaacggtgtttttcaacagagagtgaataaaagcagcacatcactatccaga
gcgtttgtctctatctgtcctcaaattgcattaggtgtcaaaacttctggtttggctgat
agaccgtgtgtagaagtggaggttcaagttgatgaaaacagattcttgaactggaactca
ggggccaagcatgaagctggctatgatgcatttatgactggatgcatttttgcacaggcg
tgcaatcatctaggcattgatttcaccctccatgtgcttgctggaggtttacccaagcag
acaaagcttcagaattatatcaatcgcctttaccttagctgggttagtggagacatcatt
gatctaagtactgggaaatgtacaacagacacctcagcttctagtaacctcaaaagtcgg
taccaggagatttcatttcctagcatcgttttgttgtggggattaccatctaaactaaaa
gcaagggagatcaaagcttgtatagtaaaagtctttggcccaaattctatttcctctatc
taccatttggatgaaagcgccgtctttattcagtttagcaagccagaaatggtttctaag
tttctggaaataaaggaaactctaagtaagaacagcgatccaatttcagtgttgcatcct
ctttcggatattctgaacgccgactgcactcacgcagctaactatgatgtgtatcaacaa
atatgcagttcacccatctcaaagaaattatttgcagatcaggctgaagctgttggtatc
aaacacaaaacagcatcatccagggcagaagggaaaaaaaagggaaaccaggtatttggc
aaagaaaacgaagttagggtgtttgataagaaagtagatgatatgatgagttcatcgtat
ggttattctgaaacggatagatctgccgattcttttcatctagatgaagctctggcaagc
aaatag
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