Nicotiana tabacum (common tobacco): 107804283
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Entry
107804283 CDS
T04643
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107804283
03015 mRNA surveillance pathway
107804283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107804283
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107804283
mRNA cycle factors
P-body specific factors
107804283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
107804283
NCBI-ProteinID:
XP_016483632
UniProt:
A0A1S4B3Y3
LinkDB
All DBs
Position
Un
AA seq
517 aa
AA seq
DB search
MKGPLDRTKVVLRHLPPTISQSMLVEQVVSRFTGRYNWFSFRPGKSRPSPQIFSCSQKHQ
TYSRAYVDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRAPKRWSKKDGREGT
ILKDPEYLEFLEFIAKPIENLPSAEIQLERKEAERAGSAKNAPIVTPLMDYIRQKRAAKS
GARKSLSNGRPTRRVDGTSSGSPSSSAFKQGSEKRRVSTTMYVLRDSSKAGSGKDKRHVL
VPNRDGQQQAEKSGTSAPGSGADAVEEETGGAADAGKKKILLLKGKEKEIPNVSSGSVIQ
GNAAPIVKNTITSSAPQQNQRREASGKIIRSILLEDAHQNQALSASQQEQHSQDKDKKPP
RPPSVQLFQKEINGVNEDKVVGTDLRVVHTEKQERRSRIRDRPDRGVWTPLRRSDRLHAS
DESMSSSTSQSSEVLDSLEGTQGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGM
RDDGISVGEGKPLRRGGPSNYGTHEKQVWVQKSSSGT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaccgttagatcgaacaaaagtagtgctgcggcacttgccgcctacaatttct
cagtctatgcttgttgagcaagttgtttcccgattcactggtcgctataactggttctct
tttcgtcctggcaagtccaggccttcacctcaaattttctcctgcagccagaagcatcaa
acttattcaagagcctatgttgactttaagaggccagaagatgttatcgagtttgccgag
ttctttgatggacacgtttttgtaaatgagaaaggcactcagttcaaaactattgttgag
tatgctccttcacagcgtgctccaaaacgctggtccaagaaggatggccgcgaaggaacc
atcttgaaagatcctgaatatctggagttccttgaatttattgcaaagcctattgagaat
cttccgagtgcagaaatacaattggaaagaaaggaagctgaacgagctggttctgcaaag
aatgctcctatagttactcctttgatggactacatacgtcagaaaagagctgccaagagt
ggagctcggaaatctctatctaatgggagaccgaccagaagagtggacggcacatcctca
ggaagtcctagctcaagtgcatttaaacaaggctctgaaaagagaagggtttctacaacc
atgtatgttcttcgagatagttctaaggctgggagtggcaaagacaaaagacatgtttta
gttccaaatcgtgatggtcagcagcaggctgagaagtctggtacctctgctcctggatct
ggggctgatgcagttgaagaggaaactggtggagctgctgatgctgggaagaagaaaatc
ctgctcttgaagggaaaggaaaaagaaattcctaatgtttctagtggttcagtgattcag
ggcaatgcggcacctattgtcaagaatacaataacatcatctgctccgcaacagaaccag
cgccgtgaggcaagtggaaagatcattagaagtattcttctcgaggatgctcatcaaaat
caggctctttctgcatcccaacaagaacagcacagccaggataaggacaaaaagcctcct
aggccaccaagcgtgcagttgtttcagaaagaaattaacggagttaatgaggataaggtt
gttggaactgatttgcgtgttgtccacactgaaaagcaggaaagacgctctaggattagg
gataggcctgatcgtggtgtttggactcctcttcgtcgttctgataggttgcatgctagt
gatgaatccatgtcttcatctacctctcaatcttctgaagtgctggattctcttgaagga
actcagggtgaaaccaaaaatgatctgccaaatgttcgtggtggggagttcagacccatg
ggaagcgggcgtaattctcattcttcttttgacaatggtacttataaacgtcgtggtatg
agggatgatggcatttcagtaggggaaggaaaacccttgagaaggggaggtccttctaac
tatggtacccatgagaaacaagtgtgggtccaaaagtcaagttctggtacttaa
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