Nicotiana tabacum (common tobacco): 107804987
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Entry
107804987 CDS
T04643
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107804987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107804987
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107804987
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107804987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
107804987
NCBI-ProteinID:
XP_016484443
UniProt:
A0A1S4B6M4
LinkDB
All DBs
Position
Un
AA seq
2418 aa
AA seq
DB search
MIPFTSTVSTQIRFLLNSLNASNSDTVFHELRQYLAYGVEGSILLLQTCVDQLNIYGKDL
KNTQLDPVFASIFRCILDKPSFSTAFSESLKDTAISEEFLVNLSTALQLTISEKIGVGLA
LSDSENVDVRKCGTNYCMGQIAELCSTNSSLDDVMPIQSVLLFLDQSEGLSKHVDLFMHM
LSLIQSKEEAQFILTPLLSDELREANFLRNLDFLNDGGEDDFDALVAEMEKEMSIADIMK
ELGYGCTANVLQCKEMLSLFLPLTEVTVARILGMVVHTRSGIEDNQNVFSTFRAALGSST
VSDPSPLDSWNADVLIDAIKQLAPGLNWVTVMENLDHEGFYIPDGTAFSFLMSIYKHACQ
DPFPLGAICGSLWKNAEGQLSLLKYAVSVPPEVFTFAHCGRQLAYVDAVNDHKIQIGHAN
HAWLCLDLLEVLCQLAERGYASSVRSILEHPLKHCPEVLLLGMAHINTAYNLLQHEVSAA
VFPVMLKNTGANGMILHLWHVNPSILLRGLVDTLNVDLENTYKVLDTCQEQKILSSVLDM
IPYAFGIRLAALASRKELVDLEKWLSNNLSTFKDIFYEECLKFLREVHLAAQDVASNCFD
PPNALWTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSST
SDGSDDIEAEANIYFHQMFSGQLTNDATVQMLARFKESTEKREQAIFECMIANLFEEYKF
FSKYPERQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGIMALEQF
VDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISLAHSESEVAHSPAADQFHGPI
TSSPMNAEGSTFPVVGQGSLQQSMQGSSSNQLPQRQQSSLDERKPSAVLSSYLKPALSSA
VQPAAVPSSDTAGIQKPQGSVSASAVLTSSPGFLRPSRAITSARFGSALNIETLVAAAER
RETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTGILEEQYYPWFAQYMVMKRASIEP
NFHDLYLKFLDKVTSKALYKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKIT
IGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGL
LAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRVREVEGNPDFSNKDVGSSQ
PPIVGDVKSGIISSLNQVELPLEVPSPSHPSGPSRILTQYAAPLHIPSAPMTEDEKLAVL
GLSDQLPSAQGLLQGQSPFSVSQLPAPASNIEQQFVVNPKLHALGLQLHFQSVLPIAMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRICNAAHLMVASLSGSLAHVTCKE
PLRGSISGQLRTLLQGLGIASELLEQAVQLVTNDNLDLGCAMIEQAATDKAIQTIDGEIA
QQLAIRRKHREGVGPTFFDASLYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQN
QSSQSPNAVPAGPSTSSGSGGVSRAYMAGSGQMNPSLYSSGVVNAGISAVPQPLEISDEI
DTSSQLNSASSPHLGMGDSAASNNFETEAIAEPFTSVSAPELHPLEPSNIAKDSGASLQP
SNATAASERVGNSISEPLLTTGDALDKYQIISEKLESLVSEEAKEAEIQALIAEVPAVIL
KCISRDEAALAVAQKAFKGLYENASNSAHVGAHLAILASIRDVSKLFVKELTSWVIYSEE
ERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAISLIQALVISDSRVISE
LQNLVEVLAKIAARPGSPESLQQLVEIAKNPAAANAATLSSVTFGKEDSNKQSRDKKIAG
PATGTREDYGVSESVEPDPAGFREQVSMLFAEWYRICEIPGANDATHAHYILQLHQSGLL
KGDETSDRFFRRLTELSVSHCLSSEVMSSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVKFIQKDAEEKKMTFNPRPYFRLFINWLLDLCSLDPVFDGANF
QVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQIKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAV
FLVGAALDIFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDESVVSGGIPDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcacctccactgtttctacacagattcggtttctgctcaatagcttgaac
gcttccaattctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcagacgtgcgttgatcaactgaatatttatgggaaagatttg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
agtttcagcactgctttttctgaatccctaaaggatactgcaatcagtgaggagtttttg
gtgaatctctctactgctttacagttgacaatatctgaaaaaattggagttggccttgca
ttgtcagactcggaaaatgttgatgtcaggaaatgtggaaccaactattgcatgggtcag
atagcagaattatgttccaccaattcttctttagatgatgtcatgccaattcagagtgtt
cttttgtttctggatcaatctgaaggcctctctaagcatgtagacttgtttatgcatatg
ctatcgctcatccagtcaaaagaagaagcccagttcattttaactcctttgctttctgat
gaacttcgtgaagctaattttttgaggaacttagatttcttaaatgatggtggtgaagat
gattttgatgctcttgtggcagaaatggagaaggaaatgagcatagcggacataatgaag
gaattgggttatggatgcactgctaatgtcttgcaatgcaaagaaatgttatccttattt
ttgccgttgactgaagtaactgttgctaggatacttggtatggttgtacatacccgctct
ggcattgaggataaccagaatgtgttctcaacgttccgtgctgctcttggtagcagcact
gtatctgatccatctccattggattcttggaatgctgacgtccttattgatgcaataaag
caacttgctcctggacttaactgggtaactgtaatggaaaacctagatcatgagggtttc
tatattcccgatggaacagccttttcctttttgatgtccatttacaaacatgcctgtcag
gatccttttcctcttggagctatttgcggttctctctggaagaatgctgagggtcagctt
tccttacttaagtatgctgtctcggtgcctcctgaagtatttaccttcgcgcattgtggg
aggcaactggcttatgttgatgcggtgaatgaccataaaatccaaattggacatgcaaat
catgcatggttgtgtcttgaccttctcgaagttctttgccagttggctgagagaggttat
gcaagttctgtgcgatccattctggagcaccctctgaagcactgtccagaagtcttgctt
cttgggatggcccatatcaatactgcgtataatctcctccagcatgaagtttccgctgct
gttttccctgttatgctaaaaaatactggtgctaatggtatgattcttcatttgtggcat
gttaatcctagcatcttgttgcggggtcttgttgatacattgaatgttgacctggagaac
acctacaaagtcttggatacatgtcaagagcaaaagattctatcatcggtactggatatg
attccttatgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcgtggat
ttggagaaatggttaagcaataacttaagcacatttaaagatatcttctatgaggaatgc
cttaagttcttgagggaggtacatctcgctgctcaagatgttgcttccaactgctttgat
cctcccaatgctctttggactatttattcagaaacttcttcaacctttttaaaggtactt
aagtctcattctggtctagtttcttcacgccacttatcggaggagctggacaagttgcac
ataacatacatggatgctaattcaaggcttaagagtgttggtggtgctgattcatccact
tctgatggttctgatgatattgaagcggaagcaaacatatacttccatcaaatgttctct
ggtcagctgactaatgatgcaacagttcaaatgcttgctcgtttcaaagaatcgactgaa
aaaagggagcaagcaattttcgagtgcatgattgctaatctgtttgaagaatacaaattt
ttctccaagtacccagaaaggcagctcaaaatagctgctgttctatttggatcacttatt
aagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggatgcg
ttgcgcaagcctgctgattcaaagatgtttgtttttgggattatggcacttgaacagttt
gttgaccgtctgattgaatggccacaatactgcaaccatatcttgcaaatttctcatctc
cgggcaactcattcggagcttgttgcgttcattgaacgagcgcttgctaggatatcactg
gcacattctgaatcagaggtagcccacagtcccgctgctgatcaattccatggtcctata
acatcttccccaatgaatgccgagggttcaacatttcccgtggttggacagggtagcttg
cagcaaagtatgcagggatcctcttcaaaccagcttcctcagagacagcaaagttcctta
gatgagagaaaaccctctgctgttctctccagctacttgaagccggctttatcatctgca
gtgcaacctgccgctgttccttcaagtgatacggctggcattcagaagccacagggttca
gtcagtgcttcagcagtactcacttcttctcctggttttcttcgtccatctcgggccatt
acctcagcaagatttggttctgcgttgaatattgaaacacttgttgctgctgcagagaga
agagaaacacccatagaggctcctgcatcagaaattcaggataagatatcatttattatc
aataacttatctgcggcaaatattgaagccaaagcgaaagagtttactggaattttggaa
gagcagtactacccgtggtttgctcagtatatggtgatgaaaagagcgagcattgagcca
aattttcatgatttgtacctgaagttcctagataaagtaacttcaaaagctttgtacaag
gagattgtccaagcaacctacgagaattgcaaggttcttttagggtcagaattgataaaa
tcaagttcagaagagcgttctttgctgaaaaaccttggaagctggctagggaaaattaca
attggaaggaatcaagtcttgagggcgcgggagattgatccaaagtctttgattatagag
gcgtatgaaaaaggtttgatgattgcagttattccttttacttcgaaggttctggaacca
tgccaaagcagtctagcataccaaccgcctaacccttggaccatgggtattcttgggtta
cttgctgagatttacgcaatgccaaatcttaaaatgaatctcaagtttgacattgaggtc
ctgttcaaaaatcttggtgtggatctaaaagaggtagttccaacttctcttctcaaggac
agggtgagagaagtggaaggaaatcctgacttctcaaacaaggatgttggatcttcccaa
ccacctatcgtgggtgatgtcaaatctggcattatatcttcactaaaccaggttgaacta
ccacttgaggttcccagtccttctcatcctagtggcccttcgcgtattttaactcagtat
gctgctcctcttcatattccatctgctccaatgacggaggatgagaagctagcagtgctt
gggctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcacctttttct
gttagtcagcttcctgcacctgcatctaatattgagcagcaatttgttgtcaatcctaag
cttcatgctctgggcctgcagttgcattttcagagtgtacttcccattgctatggataga
gctatcaaagagattgtgtccagcattgtgcagcgcagtgtttctatagcaactcagacg
acaaaggagcttgttttaaaggactatgccatggaatcggatgagacccgcatatgtaat
gctgcacatttgatggttgccagtttgtcaggaagtctcgctcatgtgacatgcaaggaa
cctttacgtggttcaatatcgggccagcttcgtactttacttcagggattgggtattgca
agtgagctccttgaacaagctgttcagcttgttactaatgacaatctcgatcttggctgt
gcaatgatcgaacaagcagcaacggataaggctatacagacgattgatggagaaatagct
caacagctagccattagaaggaagcacagagagggtgttggtccgacattttttgatgca
agcctttatacacaaggacatatgggtggtttaccagaagctcttcgccctaaacctggc
cgcttatcccattctcagcaacgggtttatgaggattttgtccgcttaccttggcaaaat
caatcaagccaaagcccaaacgctgttcctgctggtccatctacttcttctggcagcggt
ggtgtctccagggcttatatggctggaagtggacaaatgaaccccagcctttactcgtct
ggcgttgtaaatgcaggaattagtgctgttccgcagccattggaaatatcagatgagata
gatacttcatctcagcttaatagtgcatcttctccccatcttgggatgggtgatagtgcc
gcttctaacaattttgaaaccgaggctattgctgaaccattcacatcggtgtcagctcct
gaattgcatccactggaaccttcaaacattgcaaaggactcgggagcttctttacagcca
tcaaatgcaacagctgcctctgaacgtgttggaaatagtatctcggaaccattgctgaca
actggtgatgctttggataagtaccagattatttctgaaaagcttgaaagcctggtgagt
gaagaagctaaggaggcagaaattcaggcgcttattgctgaagttccagcagtcatcctc
aaatgtattagtagagatgaggctgccttggcagtggcccagaaggctttcaagggattg
tatgaaaatgcatcaaatagtgcacatgttggtgctcatcttgcaattctggcttcaatc
cgtgatgttagcaagctttttgttaaggagctaactagctgggttatttactccgaagag
gagcggaagttcaacaaagacattacggttggtttgatacggagtgaactgctaaacctt
gctgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgctact
gaatttgctatatctctaattcaagcgctggtgataagtgattcgagagtcatatcggag
ctacaaaaccttgttgaagtgctggctaagattgcagcaagaccagggtctcctgagtct
ctacaacaactagtggagatcgctaagaaccctgctgctgctaatgctgctacactgtct
agtgttacttttgggaaggaggatagcaacaaacaatctagagacaaaaagattgctggg
cctgctactggtaccagagaagattatggtgtttctgaatctgttgaaccggatcctgca
ggctttcgagagcaggtctctatgctgtttgctgaatggtaccgtatttgtgaaattccg
ggagcgaatgatgcaactcatgctcattatatcctgcaattgcaccagagtggcttatta
aaaggcgatgaaacttcagatcgttttttccgcagactcacggaactttccgtctcgcat
tgcctttcgtctgaggttatgagttccacccctcaatctcaccaagcacaacctctatcg
ttccttgcaattgatatatatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcagggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtcaaattc
atccagaaagatgctgaggaaaaaaagatgacatttaatcctagaccatattttaggctt
ttcattaattggctattggatctctgttccctggaccctgtttttgacggtgcaaacttt
caggttttaacagctttggccaatgccttccatgctcttcagcccctcaaaattccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgccgaaacttcttgct
gggaatgctcagaaggggtggccttattttcagcggttgttggtggacctcttccagttt
atggagccctttcttaggaatgctgagctaggagaaccggtccagtttctgtataaaggg
actctcagggttttgttggttctcctgcatgattttccagagtttctgtgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacaaatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
cttgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaagca
aagcagatcaagggtgatgtagatgaatatctgaagacaaggcaacagggatctccattt
ttgagtgaattgaagcagaagttgctgctctctccaagtgaagccgccaaggctgggacg
cgctacaatgtaccccttatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcaggcaaaaactcctcatgcacagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctggatattttccagactttaataatggacttggacacggag
gggcgttacttgtttttgaatgcagttgctaatcaattgcgatacccaaacaatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaatcaggagatgatccaa
gagcagataaccagagtcctattagaacgcctgattgtgaatcgacctcatccgtggggt
ctcctgatcacgttcattgagcttataaagaatcctaggtacaacttttggagtcgacca
tttacaagatgtgctccagagatagagaaactgtttgagtctgtctcaagatcatgtggt
ggccctaaacctgtggatgagagcgtggtgtcaggtggaatacctgatatccattag
DBGET
integrated database retrieval system
