Nicotiana tabacum (common tobacco): 107806003
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Entry
107806003 CDS
T04643
Name
(RefSeq) LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107806003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107806003
03019 Messenger RNA biogenesis [BR:
nta03019
]
107806003
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107806003
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107806003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH
zf-CCCH_12
Motif
Other DBs
NCBI-GeneID:
107806003
NCBI-ProteinID:
XP_075105461
LinkDB
All DBs
Position
3:39794514..39806013
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AA seq
690 aa
AA seq
DB search
MDEGEGGLSFDFEGGLDTGPTHPTASVPVMTQSSDHNIAAAAAPNANINQPPTVSAHVGG
DVGFVGNRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVY
KHTIEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLASNNYGYSNRFY
QNRNANYSTQAEKSQASQGQNXNGSVKSTATETPIIQQIQPHQQQALQTQQQGGTTQTQI
HPNGQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSV
ENVILIFSVNRTRHFQGCAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQ
KTHHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISLAAESKRQEEKA
KGVNPDNGNDNPDIVPFEDNEEEEDEESEDEDESFDQGFGPAALGRGRGRGIVWPPIMPL
GHGPRPLPGMRGFPPGMMGDGFSYGAMTPDGFPMPDHFGMGPRPFGPYGPRFSNDMMFHG
RPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQNPYRPKREQ
RAPVHDRNDRFSSGSDQGKGQEMAGSVGGPDGVNYPQRGKTEQDAQFGAGNGFKNDESES
EDEAPRRSRHGDGKKKRRDTDDDAATASEK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttaagctttgatttcgagggcggcttagacactgggccg
acacacccaactgcttccgtaccagtaatgacacaatcttccgatcacaacattgccgcc
gccgccgccccaaatgctaacattaaccagccccctactgtctcagcccatgtaggcggg
gatgtagggtttgttggcaatcgtcggagtttcaggcagactgtttgccgccactggcta
cggtcactgtgtatgaagggtgaagcctgtggctttcttcatcagtatgataaatctcga
atgccaatctgtcggttttttagactgtatggggagtgccgtgaacaggactgtgtttat
aagcacaccattgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaat
ggtcctgattgtcgatatagacatgcaaagttgcccggacctccaccaccagtggaagaa
gttcttcagaaaattcagcatctggcgtccaacaactatggttactcaaacaggttttac
caaaaccggaatgctaattattcaacacaggctgagaaatctcaagcttcacaaggacag
aggaatgggtctgtgaaatctacagcaactgagacacccattatacaacagatccagcct
catcaacaacaagctttacagactcaacaacagggtggcacaactcaaacacaaattcat
cccaatggccagcaaaatcaagcagataggactgcagtagttctgcctcaaggaacctct
aggtactttatagttaaaagctgcaaccgtgagaatcttgaattgtcggtacaacaagga
gtttgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactccgtggaa
aatgttattctgatattttcagttaatcggactagacattttcagggttgtgcaaagatg
acatctagaattggtggcgctgctaaaggaggaaattggaagcatgaacatggaactgcc
cattatggacgtaatttttcagtaaaatggttaaagctgtgtgaactgtccttccagaaa
actcaccacttgaggaatccatacaatgagaacttaccagtgaagataagcagagattgt
caagaattagaaccctctgttggtgagcagttggcttctttgctttatcttgaaccagat
agcgaacttatggcaatctcacttgcagcagaatccaagagacaggaagaaaaggcgaag
ggagtgaaccctgacaatgggaatgataatccagatattgtaccatttgaagacaatgaa
gaagaggaagatgaagaaagtgaggacgaggatgaaagctttgatcaaggtttcggacca
gctgctcttggcagaggaagggggaggggaattgtgtggcctccaataatgcctttagga
catgggcccaggcctcttcctgggatgcggggcttccctccgggcatgatgggtgatgga
ttttcttatggagctatgacacctgatggttttccaatgcctgatcattttggaatgggt
cccagaccttttggtccatatggcccacgattttcaaatgatatgatgtttcatggccgc
cctccagctggtggatttgggatgatgatgggtcccggaaggccccctttcatgggcggg
atgggtcccggagcgacaggcccacccagagctggtcgagcagttggtatgcatccatca
tttgttccaccctcatctcagccttctcaaaatccttataggcctaaaagagaacagaga
gctccagttcatgacaggaatgatagattcagctccggttcagatcaaggtaagggtcag
gagatggcgggctcagttggtggaccagatggagtaaattatccccaaagagggaaaacc
gaacaagatgcccagtttggtgctggaaacggcttcaaaaatgatgaaagcgaaagtgag
gatgaagcaccaagaagatcaagacatggggatggaaagaagaagaggcgggatactgat
gatgatgctgcaactgcttcagaaaaatag
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