Nicotiana tabacum (common tobacco): 107807007
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Entry
107807007 CDS
T04643
Name
(RefSeq) protein RST1-like
KO
K27498
focadhesin
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107807007
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107807007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
107807007
NCBI-ProteinID:
XP_016486768
UniProt:
A0A1S4BD54
LinkDB
All DBs
Position
Un
AA seq
1867 aa
AA seq
DB search
MDSYTQLLEKIRIPQPSLQKFAVISIFEKLRSAPPHLDSDSGPGTDAITQCLHSTSASVL
DQSVRELCRLVRDSKLDISRGLLELQSALEGSDSRFVNLFVKGIGFLARLGFQKNSLRFL
ASETHPFVKVLSCRVEVQTELVQQVIIFIVQSKHLGMVEACEFLVPVLNYSIVRMPSSVS
VSSFIRSLISSLAGLCCSIPGEAIPIIELLIGRLKFFPCNNSEDFTNISHCLECIVDAYV
VVLQQLVEMGSQLLHEAQLCGVELLDAMLCMNPKHTSSVENILEVSRRILIVQKDLGFGY
VPELSTITLSLFMILVQSELEHEQFLAVKLILFLLKWKYENEHDVQRDAYDLNEELLFIF
PAISLLSSPSKIVKQAATDLLHILGKLSNKLLIAQKTGQPNAMKFPSISTPKYIVFRLLQ
HLWLQDLSPLSGSFYPNYVPGHDTSIKDKHYVSKTWSSLVTDHMHHIIARRKSLSISQSQ
EIFPTNMPMIFSAVACVLLTHQTYGSSSVDILSNSSNVDPKLGVPLLLVIQFYNHIFSTN
TGADCHEVLLKLLEMLPLLASHPAIIPLIIQTLLPMLQNDKKPVLFATAIRLLCKTWELN
DRVFGTLQGVLLADRFTRFASQRDICISMAVSICDICRRNPDRGVDLILSIAACIEKQDP
LIQSLGLQSLGHLCEADAIDFYSAWDVIAKHVLNYSANAMVAHSLCFLLTWGAMDAQAYP
EASVNVLKILWDIGTSQDFRQASLWSKARASAFVALACYEVEHLERSIPDFKDKNLEFLV
SETDPEVLTAVEGFEVKILTFEHTTRRRLVKQKRVSANKIEKLLDVFPRLIFASGKERRE
KELPGAALFCLSFTKKDSRKAGAAEDLQDVQAKYEASLVDIATSLQLSRNILIAILSLQS
WKPFMRRWMRAHILLLDAKLQTAVLDKAPKAGMEILKSMIAIAERMLPRSAENIALAVGS
LCLVLPASAHVVKATASKFLLDWLSQHEHEYRQWSAAISLGVISSCLHLTDHKQKFENIN
ALLEVASVSKSTLVKGACGAGLGFSCQALLARADADDNAHLGKVRYKIEEADLLRKIIRT
LSQLICQVTPSSADVLETLSLSFPLESDNLNSEISGFLGSTSENLEEDVWGIAGLVLGLG
NCIGAMYRAGIHNAVLNVKSLLISWIPHPTEITAMSKNHEILLSVGSCLSVPIAIAMCQR
FELTDDADMEYLLGCYKELISELLSVKRFDTFHQSLLMASCLGAGSLIGVVLNEGLHPLK
IEHIKELLLLFRKSYSDSNPPLVHLGAMLGVVNALGAGAGTLVEPHPLSSSHAASDQKES
SYISSPLITNAVLEPELTSLVQEIFLVVQNSDAHQLQQHAAWAISFLRQHLWFKEPQNDE
TTAENDSAGLKTVLHSFPEDSTVMKLSLWLMHLNYLGTDAVSHVNTVSSVLRCLSHASRL
PPLDWGAIIRRCMRYEGQVAGLLTQDISFERGNLRGECLLFSLSHAKQFDPLLSFLDEQC
DIPRLRMLEPRLQFFLLSHLADLVKIFSGSRVVKLFEDVANLLSTSICSESCDSLEKSSF
RISCWRGLKLCLDESSHHTQEYKSSMEKCMELLFTSLPSAHTEGLCQGKILEEWCEAIRC
LEKTQQEWLLDLLKVSEVNIANADSLSFETVRKVRAKAKLVQSGSLSLTVLGKLKTYLLD
CRSQDIWDALTEVAITVQHAEGNAKRQWLIEALEISCVTSFPSTALQFIGLLCGSCCVYR
PVLIANKFTVLSDLPVTLTSLLSDSTWMVVADAVVSCLWKSTERIYEWNKQIKGGGDYLS
YTQPIDTSENDIACFLLLVMHQACVSLKDHLPPEKQLQLANMVVPSNIDAHELHARLNCN
VKSLPLL
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggactcttacactcaactactggagaaaattcgaatccctcaaccatcactacaaaaa
ttcgcagtcatctcgatcttcgagaagcttcgatcggctccgccgcacttggactccgac
tccggccctggaacagacgctatcactcagtgccttcattccacctcagcttctgtcctt
gatcaatccgttcgagaactatgccgcctcgtcagagactccaaattggacatctctcgc
gggttactggagctccagtctgctctcgaaggttcagattcacgcttcgtcaaccttttc
gtcaaaggcatagggtttctcgctcggttagggttccagaagaactctttgcggtttcta
gcttcagagactcatccatttgtcaaggttctttcttgtcgcgtggaggttcagacggag
ctagtgcaacaagtgattatttttatagtgcaaagcaaacatttgggaatggtggaagcc
tgtgaattcttggtacctgtcttgaattattcaattgttaggatgccctcctctgtatca
gtttcttcatttataagaagtttgatatcgtcattagctggactttgttgttcgattcct
ggggaggccattcctattattgagctcctcattgggcgtttgaagttctttccatgcaat
aattcagaagattttactaatatttcacactgccttgaatgcattgtagatgcatatgtg
gtggtcttgcaacaattggtggaaatgggatcgcagctgcttcacgaagctcagttatgt
ggtgtggagctactggatgctatgttgtgtatgaatccaaagcacacgagttcagttgag
aacattttagaagtatcaaggcgcatattgattgtgcaaaaagatcttggtttcggttat
gtgcctgaattatcaaccattactctgtccttgtttatgatacttgtgcagtctgaactt
gaacacgaacagttcttggcggtgaaacttatcctatttctgttgaagtggaaatatgag
aatgagcatgatgtccagagagatgcatatgatttgaatgaagagctcttattcatcttc
cctgctatcagccttctttcttctccatctaaaatagtaaaacaagctgcaaccgatttg
cttcatattttgggaaagctttcgaataagctacttattgcacaaaagactggacagcca
aatgcaatgaaatttccttccattagtacacccaagtacatagtcttcagactcttgcag
cacttgtggcttcaggacctatctccattatctggttctttttatccgaattatgtgcct
ggtcatgacacttccattaaagacaagcactatgtatcaaaaacttggagctccttggta
accgaccacatgcatcacattattgcaagaagaaagtccttatccatctcacagtctcag
gagatctttccaaccaatatgcccatgatattcagtgcggttgcctgtgtcctcctcacg
catcaaacatatggaagctcttctgttgatatcttgtctaatagcagcaatgtggatcct
aaacttggtgtccctttgttgctggtcattcagttctacaaccatatattttccacgaac
acaggtgctgattgtcatgaagttctgctaaaacttctggaaatgctaccgttacttgcg
tctcatcctgcaatcatacctctcattattcagacactgttgcctatgcttcagaatgat
aagaaacccgttctatttgccactgcaattcgtctactttgcaagacctgggagctcaat
gaccgtgtctttgggaccttgcagggagtattacttgcagatagatttactcggtttgca
tctcaaagagatatctgcattagtatggctgtttccatttgtgatatctgcagaagaaat
cctgatcgtggagtggaccttattttatctattgcggcttgtatcgagaaacaagatcca
ttaattcagtctctgggtctccaaagccttggccacctctgtgaagctgatgccattgat
ttttattccgcctgggatgtgattgcaaagcatgtgctaaactactcagcaaacgccatg
gttgctcacagcctctgttttcttttgacatggggtgcgatggatgctcaagcataccct
gaagcatcagtaaatgtgttgaagatactgtgggatattggaacctcccaagacttcagg
caggcttccttatggtccaaagctcgggcatctgcctttgtggcattagcctgttatgag
gtagagcatctcgaaagaagtattccagatttcaaggacaaaaatttggagtttcttgtg
tccgagactgaccctgaagtgcttactgccgtggaaggatttgaagtcaaaattttaact
tttgagcacaccacccgtcgaagattagtaaagcagaaaagggtgtctgccaacaaaatt
gagaagctgttagatgtcttcccgcgtctcatcttcgcttcaggaaaagaaagaagagaa
aaagaattacctggtgcggctcttttttgcctttccttcacaaagaaagattcaaggaag
gcaggagcagcagaggacttgcaagatgtacaagctaaatatgaggcctcactggtcgat
atagcaacatctcttcaactatcaagaaatatattgatagcaattctttctttgcaatca
tggaagcccttcatgcggaggtggatgagagcccatatcttgttacttgatgctaagttg
cagactgctgttctggacaaagctcctaaagctggtatggaaattctgaagagtatgata
gcaattgcagagagaatgctccctcgatctgctgagaatatcgcattagctgttggatcc
ctttgtttggtgctgcccgcttctgcgcatgttgttaaagcgaccgcctcgaagtttttg
ctggattggttgtcccaacatgaacatgagtatcgccagtggtcagcagcaatctctctt
ggtgtgatatcaagttgcctacacctcactgatcacaagcagaaatttgagaatatcaat
gcactgcttgaggttgcatctgtgagcaaaagcacacttgtgaaaggagcttgtggagct
ggattaggtttttcatgtcaagctcttcttgccagagctgatgctgatgataatgctcac
ctgggcaaagtgagatacaagatagaggaagcagacttgttgagaaagatcatcaggacc
ttatcccagttgatctgtcaagtcacaccttcttcagcagatgttcttgaaactctatcg
ctatcttttcctcttgaatcagataatctgaattcagagatttctggttttcttggttcg
accagcgagaatttagaggaagatgtgtggggcattgcagggcttgtattgggtttgggt
aattgtattggtgcaatgtacagagctgggattcataatgcagttctcaatgtgaaatcc
ttacttatttcgtggattccacaccctactgaaattaccgctatgagcaaaaatcacgaa
atcttattatctgtgggctcatgtctttctgtacctattgcaattgccatgtgtcagagg
tttgaacttactgatgatgcagatatggaatatctattgggttgctataaggaacttatc
tctgagctactctctgttaaaagatttgacaccttccaccagagcttattgatggcatct
tgtttgggggcaggaagccttattggtgtggttttgaatgaagggttgcaccctttgaaa
attgaacacattaaagaattgcttttgttgttcagaaaaagttactctgactccaatcct
cctcttgttcatctgggtgccatgcttggagttgtaaatgcattaggagcaggtgcaggg
acactggttgaaccccaccctttgagctcatcacatgctgcttctgatcagaaggaatct
tcttatatatctagtcctttaattacaaatgctgttcttgagcctgagttaacttcacta
gtacaagagatattcctagttgtgcaaaattctgatgctcatcagttacagcagcatgcg
gcatgggcaatttcttttcttagacagcatttgtggttcaaagaacctcaaaatgatgaa
accaccgcagagaatgattctgctggattgaagactgtcttacatagttttcccgaggac
agcactgtcatgaaattgtctttgtggctaatgcatctgaactatctcgggacagatgct
gtttcacatgtaaacacagtttctagtgttctgcggtgtctttcacatgcttctaggcta
ccaccgttggattggggagcaatcatcagacggtgcatgagatatgagggtcaagttgct
ggcttgttgacgcaagacataagttttgagagaggaaatctcaggggggaatgcttactt
ttctcattatcacatgctaagcaattcgatcctctccttagcttccttgatgagcaatgt
gacatccctcgattgaggatgcttgagcctcgtctgcaattctttttgctttcacatttg
gcagatctagttaaaattttctcaggttctcgggtcgtgaaattatttgaagatgttgct
aacttattgtcaacgtctatttgttctgagagttgtgactccttagagaaaagctcattt
aggatttcgtgctggaggggacttaagctgtgtttggatgaatcatctcatcatactcaa
gagtataaatctagcatggaaaaatgcatggagttgctctttacgtcactgccttcagct
catactgaagggctatgtcagggtaaaattcttgaagaatggtgtgaagcaattagatgt
ctcgagaagactcaacaagaatggctattggatcttctaaaggtttcagaggtgaacatc
gccaacgcagactctctctcgtttgaaactgtgagaaaggttcgagcaaaagcaaaacta
gttcaaagtggttccctgtcattgacagtgcttggtaaactgaaaacttatcttttggac
tgcagatctcaagatatctgggatgctctaactgaagttgcaataactgtacaacatgct
gaagggaatgccaaaagacaatggctcattgaggcactggaaattagttgtgtgacaagt
tttccctccacggctctgcagttcatcggcctgctatgtggcagctgctgcgtatatagg
cctgtgttaattgcgaacaaattcactgttttaagcgacctgccagtcacgctcacatcc
ctcctctctgatagcacatggatggtagtagcagatgctgttgtttcttgtttgtggaag
tcgacagagcggatatatgagtggaacaaacaaataaaaggtggtggtgattatttatct
tatacacagcccattgacacgagtgaaaatgatatagcctgctttctcctactagtgatg
catcaagcttgtgtctcgttgaaagaccatctgcctccagagaagcagcttcaacttgcc
aacatggtggtaccgtcaaatattgatgcccacgagttacacgcaaggttaaattgcaat
gtgaagagtctacctctgctttga
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