Nicotiana tabacum (common tobacco): 107808741
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Entry
107808741 CDS
T04643
Name
(RefSeq) uncharacterized LOC107808741
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107808741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nta03000
]
107808741
03019 Messenger RNA biogenesis [BR:
nta03019
]
107808741
04121 Ubiquitin system [BR:
nta04121
]
107808741
Enzymes [BR:
nta01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107808741
Transcription factors [BR:
nta03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107808741
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107808741
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107808741
Ubiquitin system [BR:
nta04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107808741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-TFIIIC
Nup35_RRM_2
Rtf2
Motif
Other DBs
NCBI-GeneID:
107808741
NCBI-ProteinID:
XP_016488792
UniProt:
A0A1S4BIW2
LinkDB
All DBs
Position
Un
AA seq
861 aa
AA seq
DB search
MTMMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCVWCWHHIMDIAEKEASEGRCPACR
TKYEKDKVVAMQANFERAENNNSNRKSKPPKAKPKANEVRKDLTNVRVIQRKMAYVTGLP
LSLADEDLLQRKEYFGQYGKISKISLSRTAGGSIQLLTNDTCSVYITYSKEEEAIQCIQF
VHGFVLEGRYLRASFGTAKYCHAWLRNTPCSNPSCLYLHSLGADEDSFGKDEVAAIHTRS
RVQQIVGATSSAMKRSGNVLPPPIDELSNTSFTSTENSTIRSAGATNDTVDHRSYMARVV
PSSDKDGGAGEPNGRTTFVDVGLSNSSRSEKDGNSSEDSRILDLCSNLSSIPINKDNHAQ
ETYSDRVLFEVPSPNQPVNHLRRDQNSTEISDEPFREDSTSFDGQRSKDLNSICQEPFLM
SSRTAKCTEDYGGNSLLHRACSPSINGMEHRSLHKQAEEALLPLSCVNSTLNDGLHDLKF
QSSVKSDTIYRGSNSFSNEEIVEHLRRTENGSLNNFDESSAFNPVKNSIISNILAIDFGS
CENSLTSRHSLTGLCNEPNGQRGSWSSLHSGQGFSFMKQDGFSSQRADLDSSSSNISLMS
NQSSILHDFRERKEQHMHESQYQTVSRRKGLAPPGFSIPSRDLPPGFPLSDEIGGFPHTL
SGSQLVNSSSNLIHPPSTRSTRTVGEADFVDPAILSCGKGKPTNGLSISGLEVGSQRRAL
EDEARLWLLMQQNYADQEGKFSRVLASQTPSAHLDQRFHGADEYAGLNDLRGFSSRLVDQ
RQNVDQSLYTHFSQQKLANGHSSNGYQHNVLDEFQCRNEVGRMAELQRNDRLGLNGYYAG
NGNLTFQGSRSGDVFARVFGM
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgatgagcaatgaagaagagaaaaggtgtcctctttgtgccgaagaaatggac
tggaccgatcagcaatttaagccttgcaaatgtggttatcaggtgtgtgtttggtgttgg
catcacataatggacatagcagagaaagaggcatccgagggacgatgtcctgcatgtcga
actaaatatgaaaaggataaagttgtggcaatgcaagcaaattttgaaagggcagagaac
aacaattcaaatcggaaaagtaaaccaccaaaggcaaagccaaaagctaacgaagtcagg
aaggatcttacaaatgttcgggtcattcagcgtaaaatggcatatgtgactgggctgcct
cttagtcttgcagatgaagatctcttacagcggaaggaatattttgggcaatatgggaaa
atttctaaaatttctctatctcggacggccggtggttcaatccagctattaaccaatgat
acctgtagtgtatatattacgtactctaaagaggaagaggccatacagtgtattcaattt
gtacacggttttgtcctggaaggaaggtatttgagagcatcgtttgggactgcaaaatat
tgtcatgcttggttgagaaacacgccttgcagtaatccttcttgtctatatttgcatagc
cttggcgctgatgaagatagttttggtaaagatgaggtagctgcaattcatacaagaagt
agggttcaacaaattgttggtgccactagtagtgcaatgaaacgctcaggaaatgtcttg
ccacctccaattgatgaattgtccaatactagctttacttctacagagaattctaccatt
cgaagtgcaggtgcaactaatgatacagtggatcaccgtagctatatggctcgtgtagtc
ccttctagtgataaggatggaggtgctggtgaaccaaacggaaggacaactttcgtagat
gttggattgtctaatagttctcgttcagagaaagatggaaatagtagtgaggatagtaga
attttggatttgtgttccaatctatcttccataccaattaacaaagataatcatgctcaa
gaaacatattctgatagagtgttatttgaagttccgtctcctaaccagcctgtcaatcat
ctgcgaagggatcaaaactctacagaaatttcagatgaaccattcagggaagactccaca
tcttttgatggtcaacgatcgaaggatttgaatagtatttgtcaagagccatttcttatg
tcatcccgcactgctaaatgtacagaggattatggtggcaattcgctcttgcatagggca
tgtagtccgagtatcaatggcatggagcatcgatcattacataaacaagcagaagaagct
ttgctgccactttcatgtgtaaattccacactaaatgatggattacatgacctgaaattt
caaagttccgtgaagtctgatacaatttatagaggttctaactcattctccaatgaagaa
atagtggagcacttacgaaggactgaaaatggtagcttgaataattttgatgaaagttct
gcattcaatcccgtgaagaacagtataatttcaaacattttagctatcgactttggttca
tgtgaaaattccctgacctcgcgtcacagcttaactggcctgtgtaatgaacctaatggg
cagcgtggttcctggagttctttgcacagcggtcaagggttctcatttatgaagcaagat
ggtttttcaagtcaaagggctgatttggattcttcttctagtaatatcagtctgatgtca
aatcagtcatccatccttcatgacttcagagaaaggaaagagcagcatatgcatgagtct
cagtatcagacagtctcaagacgaaaaggtctggctccacccgggttctcaataccctca
agggacctgcctcctggttttccgttgtctgatgaaattggaggattccctcatactctc
tctggaagtcaattagtaaatagttcatcaaatttgattcaccccccatcaacgagaagc
actagaactgtaggtgaggctgattttgttgaccctgccatattaagttgtggtaaaggc
aagccaacaaatggtttaagtatctcaggcctggaagttgggtctcagaggagagctttg
gaagatgaggcaaggctctggcttctgatgcaacaaaattatgctgatcaagaagggaaa
ttctcacgtgttcttgcttcacaaactccatctgcacatctggatcagaggtttcacggt
gcagatgagtatgctggcctaaatgatttacgtggcttttcatcaaggctggtggatcaa
cggcaaaacgttgatcaatctctgtacacacacttttcccagcagaagcttgcgaatggc
cacagttctaatggctaccagcataatgttttggatgagttccaatgtagaaatgaggtt
ggcaggatggcggaacttcagagaaatgacagattaggtctcaacggatactatgctggg
aatggaaatctaacattccaggggtccaggtccggcgatgtatttgccagggtgtttggg
atgtaa
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