Nicotiana tabacum (common tobacco): 107809091
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Entry
107809091 CDS
T04643
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107809091
09123 Folding, sorting and degradation
03018 RNA degradation
107809091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107809091
03041 Spliceosome [BR:
nta03041
]
107809091
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107809091
mRNA cycle factors
Stress granule specific factors
107809091
Spliceosome [BR:
nta03041
]
Complex C
Other components
Complex C specific factors
107809091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_5
RRM_7
RRM_YTH1
DUF848
RRM_2
Motif
Other DBs
NCBI-GeneID:
107809091
NCBI-ProteinID:
XP_016489174
UniProt:
A0A1S4BJZ8
LinkDB
All DBs
Position
12:42180202..42184866
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AA seq
657 aa
AA seq
DB search
MAATAVPPPAVQTQAETTAVGATPPPTPQMAMGGDGNGSGGVGVTTSTNYALYVGDLDTS
VEEGQLYEVFNHVAQVVSVRVCRDQSGRCSLGYAYVNFTSPQDAATARELLNFTQLNGKP
MRIMFSHRDPSLRKSGYANVFIKNLDSSIDNKALYDTFAAFGTVLSCKVAVDSNGQSKGY
GFVQFDQDEAAHNAIKRLNGMLINDKQVYVGHFIRRQERSQANASDKFTNVYVKDLPETT
TDEDLKKLFEKYGTITSAVVMKDKNGKSKCFGFVNYESSDAAASAVEQLNGSSFKEKVLY
VGKAQKKSEREAELKAKFEQERASRFEKLKGANLYLKNLDDSVNDENLKGLFSEYGTITS
CKVMRDSKGVSKGSGFVAFSTPEEATRALNEMNGKLIGKKPLFVAAAQRKDERRAWLQAH
FARMRPAGGMAPPPGPMPGFHNGAPRLVPQQVYFGQGAPGLIAPQAAGFGFQQQLMPGLR
PGVGPNFLLPYQLQRQGQHGRVGGRRGGNSQQQQQWNSGRFNPNGRNGRHPSITQGIMEP
IMPAPFDASAMTTSALDIQRTNPVPPSTLASSLAFASPEDQHRMLGEQLFPLVECIERDH
ASKVTGMLLEMDQTEVLHLIESPDALNKKVSEAMDVLRIARPGSSVGDKFGSLTLNG
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggcggttccgccaccggctgtgcaaactcaggcggaaacgacggcggtc
ggagcgacaccaccgccgactccgcagatggcaatgggaggtgatggtaacggtagtggt
ggtgttggtgtgacgacgagtacgaactatgccctgtacgtaggggatctggacacgtca
gtggaagaaggacaactatatgaggtgtttaaccacgtggcacaagtcgtgtccgttagg
gtttgcagggatcaatcgggccggtgctccctcggttacgcttacgtcaatttcacttct
ccacaagatgctgctactgctagggagttattaaattttactcagttgaatggaaaacct
atgaggataatgttttctcatagagaccctagtctgcggaagagcggatatgcaaatgtt
ttcattaagaatctggactcgtcaattgataacaaggcgttgtatgacacttttgctgcc
tttggaacggttctttcctgcaaggtagctgttgatagtaatggtcagtcaaaaggatat
ggatttgtacaatttgatcaggacgaagctgcacacaatgcaatcaagcgtctaaatggt
atgttgataaatgataaacaagtctatgttggccacttcatccgtcgacaagaaaggagt
caagcaaatgcctctgataaattcacaaatgtgtatgtgaaagaccttcctgaaactacc
actgatgaggatcttaagaagctttttgagaagtatggaaccatcaccagtgctgtagtt
atgaaagacaaaaatgggaagtccaagtgttttggcttcgtcaattatgagagctcggat
gctgcagcctctgctgttgaacagttgaatggcagttccttcaaagaaaaagttctgtat
gtaggcaaggcccagaagaaatcagaacgggaagcagaactgaaagccaaattcgaacaa
gaaagagctagtcgatttgagaaactaaaaggtgctaacttgtatttaaaaaatctcgat
gacagtgtgaatgatgaaaatctgaaagggttattctcggagtacggaaccataacgtcc
tgcaaggtgatgcgcgactcaaaaggggtgagcaagggttctggctttgttgccttctcc
acccccgaggaagctacacgagctttgaacgaaatgaatggcaagttgataggaaagaaa
cctttatttgttgctgctgcccagcgcaaggatgaaagaagggcatggctacaggcacat
tttgctcggatgcgaccagctggggggatggctcctcctcctggacctatgcctgggttt
cacaatggggcacctcgacttgttcctcagcaggtctactttggtcaaggtgccccagga
cttatagcacctcaagccgctggatttggcttccagcaacaactcatgcctggacttcgt
ccaggtgttggcccgaatttcctcttgccctatcagcttcagcgtcaaggacaacacgga
cgtgttggtggaaggagaggagggaattctcaacagcagcagcagtggaactccggtaga
ttcaatcccaatggacgaaatggcaggcatcctagcatcactcaaggtataatggaacca
attatgccagcgccatttgatgcttctgctatgacaacatctgcgttggacatccaacgc
actaacccagttccaccatcaacacttgcttcttctttggcctttgcttctccagaagat
cagcatcggatgcttggagagcagttatttccacttgtggaatgcattgaacgtgatcat
gctagtaaagttactgggatgttgcttgagatggatcaaactgaggtgcttcatctcatc
gagtcccctgatgcgctcaataagaaagtttccgaggctatggatgttcttcgcatagca
aggccaggttctagtgttggtgacaaatttggatctctcaccctgaatggatga
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