Nicotiana tabacum (common tobacco): 107809493
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Entry
107809493 CDS
T04643
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03008
Ribosome biogenesis in eukaryotes
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107809493
09123 Folding, sorting and degradation
03018 RNA degradation
107809493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107809493
03019 Messenger RNA biogenesis [BR:
nta03019
]
107809493
03009 Ribosome biogenesis [BR:
nta03009
]
107809493
03016 Transfer RNA biogenesis [BR:
nta03016
]
107809493
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107809493
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107809493
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
RNases
107809493
Transfer RNA biogenesis [BR:
nta03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107809493
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107809493
NCBI-ProteinID:
XP_075096060
UniProt:
A0AC58TFP4
LinkDB
All DBs
Position
20:complement(93891593..93926862)
Genome browser
AA seq
1112 aa
AA seq
DB search
MGVPAFYRWLAEKYSMVIVDVIEEEAAVIEGIKVPVDTSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFHCMFDYIDRLFSMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
SAKDAADAAAEEETLREEFEREGRKLPPKQVSQVFDSNVITPGTQFMATLSIALQYYIHL
RLNHDPGWKKVKVILSDANVPGEGEHKIMSYIRIQRNLSGYDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFIPGQQDKCFLCGQMGHLAANCEGKAKRKAGEFDEKGDVEVVAKK
PFQFLNIWTLREYLEYDLRIPNPPFAIDLERIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRSLGGYLTDASQPNLGRVESFIQAVGSYEDKIFQKRSRLHQRQSERIK
RDKAQAKRGDDSTPQAEPKSLVPVARFHGSRLAAGLSPSPYQQGGASKSCRPDQLGQATS
GLSILDIKNEQSETSDAKRTVVRAQKVSRLSSEATIGSAIVEAENSLEIEVSENKEELKT
KLNKLLRDKNDIFNSENPEEDKVKLGAPGWKERYYEEKFSAKTPEEMEAIRKDVVIKYTE
GLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNITFELGSPFKPFNQLLGVFPAA
SAHALPEQYRRLMTDPTSLIIDFYPADFEVDMNGKRFSWQGIAKLPFIEEARLLAEVAKI
EHSLTEEETRRNSVMCDMLFVSLSHPLSPCIFSLDDRCKKLTDNERFKVKEQLDPIARSS
CSGGMNGYLSLCMGDPCPPIFRSPIEGMEDIKQNQVICAIYRLPDTRKHIARPMEGVIFP
KKMVALGDMKPDPVLWHEDTRKKPWENGRNHHPGAISGRQLGEAAHRLVVNSMQKKEDRG
GHSDFRRAYNGQGHDDYTHARPASYPAARGPPFQTHRYNVHENTRPSSSHSARDAGRQPR
SSGSSTVRHHYDHSYSESYVPAAVASYSRSHPHHESGGRPVTHSRDYRTRGHHTDGMQQN
GGYSYSSHASHPQHVDQVPVPPTANFHQQSGYSTSTSYEPYGAGNYNQRGGGWAPQTNQN
VRGYHHPHPSGNQFSALGRGGSRRPPSSGHSR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcattttaccggtggttagctgagaagtattcaatggttatagtagac
gtcatagaagaagaagcagctgttattgaaggaattaaagttccagttgatacgagtaaa
cctaacccaaacaacatcgaatatgataacctttatttggatatgaatggtattattcat
ccctgttttcaccccgaagatcgaccttctccaacaacatttgatgaggtgttccattgc
atgtttgattacatagacaggcttttctctatggtgcgtcctcgaaagctgctatttatg
gctattgatggtgttgcgccaagggcaaaaatgaaccagcaaagatctagacgttttaga
tcagcgaaagatgcagcagatgcggcagctgaggaggaaacattgcgtgaggaatttgag
agggagggtaggaagcttcctcctaaacaggtgtcccaagtttttgattcaaatgtaatt
actccagggacacaattcatggccacattgtcaatcgctcttcaatattatattcacctt
agactaaaccatgatcctggatggaaaaaagttaaggttatactttctgatgcaaatgtc
cctggtgaaggtgagcataaaattatgtcctatattcgtatccaaaggaatctttctggt
tatgatccaaatacacgccattgtctttatggtttggatgcagatttaattatgttgggc
ttggctacacatgaagttcacttctctatactcagagaggtcgtatttattccaggccag
caggacaaatgtttcctttgtggtcaaatgggtcatttagctgcaaattgcgaagggaag
gcaaagcgaaaagcaggggagtttgatgagaaaggagatgttgaggttgtggcgaaaaaa
ccattccagtttctcaacatctggactttgcgggagtatttggaatatgatttgagaatt
cccaatcctccttttgcgattgatttagagcgtattgttgatgacttcatatttatgtgc
ttcttcgttggcaatgattttctaccacatatgcccacactggagattcgcgagggcgca
ataaacttgttgatggctgtttataagaaggagtttaggtctttgggagggtatctgact
gatgcaagccagccaaaccttggcagggtagaatcttttattcaggcggtaggatcatat
gaagataagatattccaaaagagatctcgcttacatcagagacaatctgaaagaatcaag
cgtgataaggcgcaggcaaaaagaggagatgactctacacctcaagctgaaccgaagtct
cttgttccagtagctcgattccatggttctcgtctagctgcgggtctttcaccttctccc
tatcaacaaggaggagcttcaaaatcttgtagacctgatcagcttgggcaggccacctct
ggtctttccatccttgacattaagaatgagcagtctgagacttctgatgctaaaaggact
gttgtccgtgcgcaaaaagtatcacgtttgagttccgaggccacgataggatctgcaata
gttgaagctgagaatagccttgaaattgaagtttctgaaaacaaggaagaactgaaaaca
aagctaaacaagttgctccgtgacaagaatgatattttcaattcagagaatcctgaagaa
gacaaggtcaaactgggagcaccaggatggaaagagagatattatgaagaaaaattttct
gcaaaaacacccgaggaaatggaagcaatacgcaaagacgttgtgataaaatatacagaa
gggctatgctgggttatgcactattattatgaaggtgtttgttcctggcagtggttttat
ccctatcattacgcaccatttgcttctgatcttaaggatcttggccagttgaatatcaca
tttgaactaggttcacctttcaagccgttcaatcagctgttgggggtcttccctgctgcc
agtgctcatgctcttccggagcagtataggaggttgatgacagacccaacttcgctcatt
attgatttttatcctgccgattttgaggtggacatgaatggaaaacgcttttcttggcag
ggtattgcaaaattgcctttcattgaagaagcgcggctcctagcagaggttgcaaaaatt
gaacattctttgacggaagaagaaacacgaagaaacagtgtgatgtgtgatatgcttttt
gtgtcattatctcatcctttgtctccatgcattttctctcttgatgatcgctgtaagaag
cttacagacaacgaacgtttcaaagtcaaggagcagttggacccaatagctaggtcttct
tgcagcggtggtatgaacggatacctatccctttgcatgggagatccttgtcctccaatt
tttagatcacctattgaagggatggaggatattaagcaaaatcaagtcatatgtgcaata
tacagacttcccgatactcgtaaacatatcgctcggccaatggaaggggttattttccca
aagaagatggtcgcattaggtgatatgaaacctgatcctgtactatggcatgaggatact
aggaagaaaccttgggaaaatggacggaaccaccaccctggtgcaatttctggtcgtcag
cttggagaagctgcgcatcgtttggtggttaatagtatgcagaagaaagaagataggggt
ggacatagtgatttcaggcgtgcatataatggtcaggggcatgatgactatacgcatgcc
agaccagcgtcctatcctgctgcacgtggtcctccctttcaaacccatagatacaatgtt
catgagaacacacggcctagttccagccattctgctcgagatgctggacgtcaacccaga
tcttcaggttcctcgactgtacggcatcactacgaccatagctatagcgagtcttatgtc
cctgctgctgtggcttcttacagtaggtctcaccctcaccacgagagtggtgggcgacct
gtcacccacagcagagattatcgtactcgtggacatcatactgatggaatgcagcaaaat
ggtggatacagttattcctcgcatgccagtcatcctcagcatgtggaccaagtaccagtt
ccaccaactgctaatttccaccagcagagtggatatagcacttctacgagctatgaacct
tacggggctggaaactataaccaacgtggtggtggatgggcccctcaaaccaaccaaaat
gttagaggatatcatcatccacatccttcaggaaatcagttctcagctttagggagggga
ggaagtagaaggccaccttcttcagggcatagtcggtag
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integrated database retrieval system
