Nicotiana tabacum (common tobacco): 107812177
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Entry
107812177 CDS
T04643
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107812177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107812177
03019 Messenger RNA biogenesis [BR:
nta03019
]
107812177
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107812177
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107812177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107812177
NCBI-ProteinID:
XP_016492698
UniProt:
A0A1S4BV40
LinkDB
All DBs
Position
Un
AA seq
900 aa
AA seq
DB search
MALAGGFASSKPIQNDAVVAAPPKPLPSPSIIERFRAALKEREEELRASSMPVIDDDDDV
IVLPPTMDEIVRLYELFLSDLTFNSKPVITDLTIIAGEQREHGQGIADAICSRILEVPVE
QKLPSLYLLDSIVKNIGRDYVRHFSAHLPEVFCEAYRQVHPSMHPAMRHLFGTWSTVFPA
PVLRKIETRLQFSQSGAQQSSGLTSSRASESPRPTHGIHVNPKYLEARRQLGHSTIDSVR
AENPAGHISSDLEAKQVLSTASRNARSSSPYRVGPARSLSPTLDEFAVDNSAIGLREGAS
PSHSALDYGLNRVRGRDDERNEWQRILPDDANQQPDIPVKYGLNKDFDLQGPRALIDAYG
IDEREKLANQRQRKMGNAAMNSLGERIAVKTWQNTEEEEFNWEDMSPTLADQSPFNDLST
SIRHPQSIRTRPGLDSQHAVPLVTDPRRSWSNRGQYSSVHDSSLDDVHSSGRGARNKITG
YCDETSLISGSHYLQKLPENVPLLHQRHLKVEGSGISLVTGEPKHPLISNLVADGHTWRP
PYIPPRMNPTFDFSVQDIRAITGRVPIVPWPPTDVHNPQSLTSKPFVLPHQHIRSPFEVK
NASSSVVNHNLDKSVLPGQQIDNSKSNSYIKFPQFPSQHPASFSASLQNSEQVASAESQL
LFSQRMHQTTVPSASLPASNHLLLPPIYGYTPQGPGSSVGTLMPLPVSGTQVPLPLVNIP
NTSSQFSSGALPPLPRGPLPMSSQFTPTSQNLGQVTPNPPAGGFSSLISSLMAQGLISLT
NQAPPQDSVGLDFNPDLLKVRQDSAVTALYADLPRQCKTCGLRFKCQEAHSSHMDWHVTK
NRVSKNRKQKSSRKWFVSVNMWLSGTEALGSDAAPGFLPAEQVVEKKDDEELAVPADXLL
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggctttagccggcggttttgcgagctctaagccaatccaaaacgatgccgttgtggcg
gcgccaccaaaacccttgccgtcaccttctataatcgaacgatttagggcggctttaaag
gaaagagaggaggaacttagggcttcctctatgccggtcatcgacgacgatgatgatgtt
atcgtgttgcccccgaccatggacgagatagttaggctttacgagctctttttgtccgat
ttaactttcaattctaagcctgtcattactgacctcaccataattgccggcgaacagaga
gaacacggtcaaggcatcgctgacgccatttgttctcgcattcttgaggtcccagtagaa
cagaaactaccctcattataccttctggatagtattgtaaagaatattggcagggattat
gtcaggcatttctctgcccatttacctgaggttttctgtgaggcatacaggcaagtgcac
cctagcatgcatcctgcaatgcgccacctcttcgggacgtggtcaactgtgttcccagca
cctgtcctccgcaaaattgagactcgcctccagttttcccagtcgggggcccaacaatct
tctggcttgacttcatcaagagcatctgaatcaccgcgaccaactcatggcattcatgta
aatccaaaatatttggaagcaaggcgtcagcttgggcactccactattgattcagttaga
gctgaaaatcctgcaggccatatatcttcagatctggaagctaagcaagttttgtctaca
gcttcaaggaatgcaaggtcatcctctccttatagagtggggcccgcgaggtcattgtca
cccacccttgatgagtttgcagtggataattctgccataggactcagagaaggggcctca
ccatctcattctgcacttgattatgggcttaacagagtaagaggtagagatgatgagagg
aatgagtggcagagaattttgcctgatgatgccaatcagcaaccagacattcctgttaaa
tatggtctgaacaaggattttgatcttcaaggacctagagctttgattgatgcttatgga
attgatgaaagggaaaaattagccaatcagaggcaaagaaagatggggaatgctgctatg
aatagcttaggcgaaaggatagccgtaaagacgtggcaaaatactgaagaggaagaattc
aattgggaagatatgagtccaactttagcagatcagagtccttttaatgatttgtcaaca
tctattcgtcatcctcagagtattaggacgagacctggcttagattcacaacatgctgtg
cctttagtgactgatcctagaaggagctggtctaatcgaggacaatattcgtcagttcat
gattcttccttggatgatgttcactcgtctggtcgaggggcgagaaataaaattactgga
tattgcgatgagacatctctgatttcaggttcacattatcttcaaaaacttccagaaaat
gtgccactgttgcatcaaagacatttaaaggttgaaggaagtggaatctcattagtgact
ggtgaaccaaagcatcctttgattagcaatttggttgccgatggacatacttggaggccg
ccatatattccgccaagaatgaatcctacttttgacttttcagttcaggatattcgggct
attactggacgggtcccgattgtaccatggcctcccacagatgtgcataatccccaatct
ttgacttcaaaaccttttgttctgcctcatcaacatatcagaagtccttttgaagtaaag
aatgctagcagttcagttgtcaatcataatctggacaagtcagttcttcctgggcaacag
attgataattcgaagagcaactcatatatcaagtttccgcaatttcctagtcaacatcct
gcatcattttctgcaagtcttcaaaactctgaacaagtggcttcagcagaatctcagcta
ttgttttctcagcgtatgcatcagactacggttccaagtgcctcacttccagcctcgaac
catttgctattaccgccaatttatggatacactccacagggtcctggttcttctgtaggt
actctgatgcccctgccagtttcaggtacgcaggtgcctctgccattggttaatatccca
aatacatcttcacaattctcgtcaggggccttaccacctttgcccagaggcccacttccc
atgtcatctcaattcacgccaacatcccaaaatctaggtcaggttacacctaaccctccg
gcagggggcttttcaagcttgattagctcactcatggcccaaggtttgatttcgttgaca
aatcaggctcccccacaggattctgtgggccttgattttaatccagatctccttaaggtt
cgtcaggattctgcggtaactgctttatatgccgatcttccaagacagtgcaaaacttgt
ggcctacgatttaaatgccaagaggctcacagcagtcacatggattggcatgtaactaag
aatcgagtatcaaaaaatcgcaagcagaagtcttctcgtaagtggtttgtaagtgtcaac
atgtggcttagtggtacggaggctttgggatctgatgcagctcctggatttctacccgct
gagcaagttgtggaaaagaaggatgatgaagaattggccgtgcctgctgatgngttgctt
tag
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integrated database retrieval system
