KEGG   Nicotiana tabacum (common tobacco): 107812396
Entry
107812396         CDS       T04643                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03020  RNA polymerase
nta03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107812396
  09124 Replication and repair
   03420 Nucleotide excision repair
    107812396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nta03021]
    107812396
   03400 DNA repair and recombination proteins [BR:nta03400]
    107812396
Enzymes [BR:nta01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107812396
Transcription machinery [BR:nta03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107812396
DNA repair and recombination proteins [BR:nta03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107812396
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 MRNIP
Other DBs
NCBI-GeneID: 107812396
NCBI-ProteinID: XP_016492974
UniProt: A0A1S4BVT1
LinkDB
Position
Un
AA seq 1203 aa
MYEESEYVDENVDDRVLMAVDEEEEQAEGDEAQEITQDDAWAVISAYFEEKGLVRQQLDS
FDEFIQNTMQEIVDETANIEIRPESQHNPSRQPDFVETIYKIKFTQIYLSRPMMTESDGE
TNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSY
CSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYVA
EVRSIAEGQNKAPSSMFVRMLSRSNAKGASGQYIRATLPYIRAEIPIIVVFRALGFVADK
DILAHICYDFADTQMMELLHPSLEEAFVIQNQQVALDYIGKRGSTVGFTRERRIKYAKEI
LQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGPLLGG
LFRMLFRKLTRDVRSYVQKCVDSGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR
AGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLV
KNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLL
VRTLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVEKKKLIIKKKDIIALQ
MRESSEDSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNSRLNPEEAYSETYTHCEIH
PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV
TTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK
KMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQ
GQPARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQ
KGTIGMTYTQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATP
FTDVTVDNISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPIYYQRLKHMVDDKIHSR
GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQC
GLIAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKEPKPSSGK
KAS
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgtacgaagaaagtgaatatgtagatgaaaatgttgacgatagagtactaatggcagtt
gatgaagaagaagaacaagctgaaggcgatgaggcgcaggaaataactcaggacgatgca
tgggcagttattagtgcatattttgaagagaaaggtctcgtaaggcaacaattggactcg
ttcgacgagtttatacagaatacaatgcaagaaattgttgatgaaactgctaatattgag
atccgtcctgaatctcagcataatcctagtcgtcaacctgatttcgttgagacaatctat
aagatcaagtttactcagatatacttgagtagacctatgatgacagaatctgatggagag
actaatactttgtttccaaaggctgcaaggttaaggaacttaacatactcctcccctcta
tatgttgatgtgaagaaggaagtaataaagaaaggtcatgactatgaagaagtcactgag
aatcaggaatttaccaaagttttcattggaaaggttccaataatgcttcgatcgagctac
tgcagcttgtataacctatcagagaaagacttaactgagttgggagagtgtccttatgat
caaggtggatatttcatagtcaatgggagtgaaaaagttctgattgcacaggaaaaaatg
agcagtaatcacgtttatgtattcaagaaaagacagccaaacaagtatgcatatgtagca
gaagttcggtctatagctgagggccaaaacaaggcgcctagcagcatgtttgttaggatg
ctttctaggtccaatgctaagggggcctctgggcaatatatacgtgccactcttccatac
atacgggctgaaattccaattatagttgtcttcagggcattaggatttgtcgcagacaag
gatatattggcacatatctgttatgattttgctgacacacaaatgatggaattactccac
ccttccttggaagaggcttttgtgattcaaaaccagcaggttgcacttgactatattggc
aaaagaggatctactgttggtttcacaagagaaaggagaattaagtatgcaaaagagatc
ctccaaagggagatgcttccacatgttggtactagggagtattgtgaaactaagaaggcc
tactatttcggctacatcatccatcggcttttactctgtgtactaggacggaggcctgaa
gatgatagggatcattatggaaataaaagactggatcttgctggccctttacttggtggc
ttattccgaatgctattcagaaagctaaccagggatgtgagatcctatgttcaaaagtgt
gttgacagtggaaaggatgtgaatttgcaatttgcgattaaagcaaaaacaattacaagt
ggacttaagtattctcttgctactgggaactggggacaagcaaatgcagctggtacaagg
gcaggagtttcacaggttttgaatcgtttgacatttgcatctactctttctcacttgcgt
agattgaactcaccaatagggcgcgagggtaaactggcaaaacctaggcaactccacaat
tctcactggggaatgatgtgtccagcagaaacgcctgaaggacaagcatgtgggctggta
aagaaccttgcactaatggtgtacataacagtaggatcagcagcaaatccaattttggag
tttctagaggagtggagtactgaaaattttgaggaaatatctcccgcggttattccccaa
tctaccaagatttttgtaaatggttgttgggttggcattcatcgtaatccagatctattg
gttaggacactgagacagctgaggagacaggttgacgttaatactgaagttggagttgtc
cgcaatataaatttaaaggaactgcggctatatacagattatggacgctgtagtaggccg
ttattcattgtggagaaaaagaagttaataataaagaagaaggatattatcgcattgcag
atgagggagtcatctgaagattctggctggcatgatcttgtggcaaaaggatttattgag
tatgttgatacagaggaagaagagactacaatgattgcaatgaccataaatgatcttaca
aattcaaggctgaacccagaagaggcttattctgaaacctacacgcactgtgaaatccat
ccatctttgatattgggagtatgcgcttctatcataccatttcctgaccataaccagtcc
cctcgtaacacataccaatcagctatgggaaaacaagcaatggggatttatgtcaccaat
taccaatttcggatggatacattggcctatgtactgtattatccgcagaagcctcttgtt
actacacgtgctatggagcatttgcatttcaggcagcttcctgctggcattaatgccatt
gttgccatttcctgctattctggctataaccaagaagactctgtcatcatgaatcaatct
tcaattgaccgtggcttcttccgctctctattttttcgttcatatagagatgaagagaaa
aagatgggaacgcttgttaaagaggatttcgggcgtcctgatagagaaaataccatggga
atgcgacatggatcctatgataaattagatgatgatggatttgcgcctcctggaacaaga
gtttctggtgatgatgttataattggaaagaccacaccaatttctcaagatgatgctcag
ggacaaccagcaagatacacacgaaaagaccacagtacaagtctacggcatagtgaaact
ggaattgtggatcaggttcttttgacaacaaatgcagatggactgagatttgtcaaaata
agaatgaggtctgtcagaattccacaaattggagataaattcagcagcaggcatggacaa
aaaggaacaataggaatgacttatacacaagaagacatgccatggaacattgaaggcatc
accccagatatcatcgtgaatccacatgccattccttctcgtatgacaattggtcagcta
gtcgagtgtattatggggaaggttgctgctcacatgggaaaggaaggagatgctacccct
tttactgatgttactgtggataatatcagcaaagctctgcacaggtgtggttatcagatg
cgtggttttgagagaatgtataatggtcatacaggccgtgtattgaccgcaatgatattc
ttggggccaatttattaccagaggctgaagcacatggtggatgataagatccattctcgt
ggtcgtggtcctgtgcagattctcactagacagcctgctgaaggaagatctcgggatgga
ggcctacgatttggggagatggagcgtgactgtatgatcgctcatggggctgcacatttc
ctcaaagagaggctgtttgatcaaagcgatgcttacagagttcatgtatgccagcaatgt
ggtttaattgcaattgctaatctaaaaaagatgtcatttgagtgcagatcttgcaggaat
aaaactgataatgttcaggtgtatatcccttatgcctgcaagcttctgattcaagagctc
atgtcaatggcaatcgcaccaagaatgcttacaaaggaaccgaaaccatccagcggaaag
aaagcatcctga

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