Nicotiana tabacum (common tobacco): 107812893
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Entry
107812893 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107812893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107812893
03009 Ribosome biogenesis [BR:
nta03009
]
107812893
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107812893
Spliceosome [BR:
nta03041
]
Complex A
U1 snRNP components
U1 related factors
107812893
Complex B
107812893
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107812893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107812893
NCBI-ProteinID:
XP_016493558
UniProt:
A0A1S4BXI4
LinkDB
All DBs
Position
Un
AA seq
501 aa
AA seq
DB search
MSGYDSRPADPGSYRDRRSDSGFGGGSSYRSSSSSRKDYEGKDSPRKVDLDGLTPFEKNF
YVESPSIAAMTESEVEEYRRRREITVEGRDVPKPVKSFHDVGFPDYVIQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRATYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLLNAY
KVVIGSADLKANHAIRQHVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTYFTAANARFAKDLINILEEAGQKVSPELAKMGRGAPP
PPGLGGFRDRGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctatgatagccgtccggcggaccctggctcttaccgcgaccgtcgcagtgac
tcgggctttggtgggggctcgagttatagatcatcgtcatcgagcaggaaagattacgag
ggtaaggattcgccacggaaggtcgatttggatggattgactccattcgagaagaatttc
tatgttgaatcaccgtccatcgcggcaatgaccgaaagtgaggtggaagagtatagacga
cgccgggagatcactgttgagggccgtgacgtgcccaagcctgtaaagtcctttcatgac
gtaggatttccagattatgtcatccaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggccttgaagggccgtgatctcattggtatagca
gaaacagggtctgggaagacacttgcttatctgttgcccgcaattgtgcacgttaatgcc
cagccatttttagctcctggagatggtcctatcgtcttagtgttagccccaactcgtgaa
ctagctgttcagattcaacaagaagccactaaatttggtgcatcgtcacggattaagaat
acctgcatttatggtggggttccaaaggggccccaggttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggaaggttgattgatatgctagaatctaataatacaaat
ttgcgaagggcgacatatctcgtgctggacgaggctgaccgcatgctagacatgggtttt
gaacctcaaatccgcaaaattgtttctcagatacgtccagatcgtcaaacgttgtattgg
agtgccacatggcccaaggaagttgagcagcttgcaaggcagttccttttaaacgcatac
aaagtggttattggttcagctgacctgaaagctaatcatgctattcgccagcatgtggaa
attgtctcggagagccagaagtataataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggataccaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaggcagaaaga
gattgggtcctttcagaattcaaagctggaaagtctcctataatgacagctacagatgtt
gctgctcgaggtctagatgtgaaggatgtaaaatttgtaatcaactatgattttcctgga
tcgctggaggactatgttcatcgcattggtagaacgggaagggctggtgcatcagggaca
gcatacacctactttaccgcggcgaatgctaggttcgcgaaggaccttattaacattctt
gaggaggctggacagaaggtcagtcctgaactggcaaaaatgggacgtggtgctcctccc
cctccaggtcttgggggttttcgagaccgtggaaggggttatggaggcaataggcaatgg
agctaa
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