Nicotiana tabacum (common tobacco): 107812928
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Entry
107812928 CDS
T04643
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nta03036
]
107812928
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
107812928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
HEAT_GCN1_C
TPR_DNAAF5
PHD_2
PHD_Pygo
Motif
Other DBs
NCBI-GeneID:
107812928
NCBI-ProteinID:
XP_016493603
UniProt:
A0A1S4BXM9
LinkDB
All DBs
Position
22:85850360..85878965
Genome browser
AA seq
1780 aa
AA seq
DB search
MANFSTGSGVPRGISLSNTVHSETAPSLPLPSLPVFCGALDQNLRLFDESESRSLNRSDV
ISHAVKIADLLRNTDVSYLNLRADASPQPYGFVGNLDLYNEVLRCNSEAFACIGAGHIKG
TAQNRKADSGPLKCIPAVQLPQRSTVEIHDYQHDHVTSDVTASSRKPKVKKKGRENSLLS
SGPDASECQDAVAAGFCEILEDFCGRAENFGDERDEREFLPMSLADLKVVRNEITSIRAK
KALHLIPVDTLMRSLRVLDHQIHRAEGLSINDYEQVDTEVVSLIFCALESIHATLAIMAY
RGMPKQLYKEEIIERIMDVSRHQVMNVIFGSDPVYRALHKPTDIGVPEGEEDEEADGDFV
SPNKKKRSRSVKPRKSTSNKVSSAVSDILQKLCVILGFLKELGTIERLPDSCILQLIKTC
FTTLVVENIQRLQLESISLISRIFYAYTQHRAYIMDEALQILLKLPSSKRMPRTYPLPDE
EQRQIQLITGLLIEIVHSSSNLPDVLMEASDSPSLEVSIDASYPIKSYESITEACCLFWS
RVLQRLTNTKNQEAAELKTMIENLVIDLLITLNLPEYPASAPLLEVLCVLLLQNAGLKSK
DVSVRSMAIDLLGTIAARLKQDAVHCREEKFWIVKELRSEDMNDRTLPKDACSVCLDARV
DKSLVRCHGCQRLFHVDCTGIRGHDVPNRGFHCPMCFSRKQLLVLKSHCESQSKDASQNK
RNKSGKTSQVTEAITNLETVQQLLLNYLYDAAAVDDGHLFTRWFYLCLWYKDDPNSQQKF
MYYVARLKSQAIVRDSGSLSSLMTRELAKKLTLALGQNSSFSRGFDKILQVLLASLRENS
PIIRAKALRAVSIIINVDPEVLGDKHVQTAVEGRFCDSATSAREAALELVGRHIASYPDV
GLKYFEKLAERIKDTGVSVRKRAIKIIRDMCTSNSSFSEFTTACVEIISRVNDEESSVQD
LVCKTLYEFWFEEPSGSQHQFFGDGSSVPLEVAKKTEQIVQMLRRMPSLQPLVTVIKRNI
ALDFFSQSAKAVGINPVSLASVRRRCELMCKCLLEKILQVTEMNTGEGEVHMLPYMRLLH
AFCVVDPTLCAPASDPSQFVVTLQPYLKSQADNRVAAQLLESIIFVIDSVLPLLRKLPQS
VAEELEQDLKQMIVRHSFLTVVHACIKCLCSASKVAGKCSTIIEHLIQLFFKRLAALGFS
NKQNFQQVGRSLFCLGLLIRYSSSLLYVSGSSNNSHVASSINLFKRYLQTEDYVIKVRSL
QALGYVLIARPECMLEKDVGKILEATLSSNTDPRLKMQSLQNMYEYLLDAESQMGIDSAS
ENEAANTAVGGPSVPVAAGAGDTNICGGIVQLYWAKILERSLDVNEQVRQSALKILEVVL
RQGLVHPITCVPFLIALEIDPQEVNSKLAHHLLMNMNEKYPSFFESRLGDGLQKSFMFIQ
AMNKGGSQSLDAQAKAPGIMSGKSDPGSFDHAKHGVSRIYKLIRGNRLSRNKFIASVVRK
FDTPSLSDSVVSFLIYCTEILASLPFTSPDEPLYLIYSINRIIQVRAGTVEANMKGFLQF
LQAGSQKINGSGSIQTEPTQPIKCESETMVTNEIQEGLERDRGCVDYGSVNSYMPHPASL
NPHGISNVDLHTIQVECLAAGALQLLLRLKRHLKIVYDLNDARCQAYSPNETPKPGEGLS
RQNLQLNVKEINIDPPNNYEDFVRRYQDFKNAMKEDTVDYAVYTANIKRKRPPPRRSRKC
GRMMGGDDEDDEDDGEWGSGMRTSDSGSGRRSSSRLRQQY
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttttcaactggcagtggtgtacctcgaggcataagcttatcgaatacggtg
cactccgaaactgcgccgtcgttgccgttaccgtcgcttccagtgttctgcggtgcactc
gatcagaaccttcggttgttcgacgaaagcgaatcgagatcgttgaatcggagtgacgta
atcagtcacgctgtcaaaattgctgatctgcttcgcaataccgacgtttcttatttgaac
cttagagctgatgcgagtcctcaaccgtatggctttgtggggaatctggacctctataat
gaagtgcttagatgtaactctgaagcctttgcttgcataggtgcaggccacattaagggg
actgcacaaaatcgtaaggctgattcgggtcctcttaagtgcatacctgctgtccaactg
ccacaacgaagcactgtagagatccacgattatcagcatgaccatgttactagtgatgtt
accgcatcttctaggaaaccaaaagtcaagaagaaaggaagggagaacagtttactatca
agtggtcctgatgcttctgaatgtcaagatgcagttgcagcaggcttttgtgagattttg
gaagatttttgtggcagagcagaaaattttggtgatgagcgggatgaaagagaattttta
ccaatgtctttagcagatcttaaagttgttcggaatgaaatcacatctatccgagcaaag
aaagcactgcatttgattccagttgatactctaatgagatcactcagggtcttagatcac
cagattcatcgagcagaaggtttatcaattaatgattatgaacaggtggatacagaggtt
gtgtcattgattttttgtgctttagagtccattcatgcaactttagctataatggcttac
cgtgggatgcctaagcagttatacaaagaagaaatcattgaaagaatcatggacgtctct
cggcaccaagtaatgaatgttatatttggtagtgatcccgtataccgtgcgctgcacaaa
ccaaccgacataggggttcctgaaggtgaagaagatgaagaggctgatggggactttgtt
tcaccaaataagaagaagagatctaggagtgtgaaaccaaggaaatcaacatcaaacaag
gtttcttctgctgttagtgatatacttcagaagctttgtgtgattcttggttttcttaag
gagttgggcacgatagagcgcctacctgacagttgcattctccagcttatcaagacctgc
ttcacaacgcttgtggttgagaatatccagcgtttgcaattggaatctataagcttaata
agtcggatattttacgcatacacacagcatcgtgcttacataatggatgaggcacttcag
attcttttgaagttaccctcttcaaagcgcatgcccagaacttatccgcttcctgatgaa
gagcagaggcaaattcagctcatcactggccttctgattgaaatagttcacagcagttca
aaccttccggatgttttgatggaagcatctgacagtccttcactggaagtctcaattgat
gccagttaccctatcaaatcctatgagtccatcactgaagcttgctgtcttttctggagt
cgtgttcttcaacgtctaacgaacacaaaaaatcaagaggcagctgagttgaagacaatg
attgagaatcttgtcattgatctgttgattactttgaatttgcctgaatatcctgcctct
gctcctcttctggaggttctttgtgttttacttcttcaaaatgctgggttgaaatctaaa
gatgtttctgttcgttcaatggccattgaccttctcggcacaattgctgcaaggctgaaa
caggatgcagtccactgtagggaggagaaattctggattgtgaaggagttgagaagcgag
gacatgaatgaccggactcttcccaaggatgcatgttctgtttgtttggatgccagagtt
gacaaatcacttgttcgatgtcatggttgtcagagactatttcatgttgactgtaccgga
attaggggtcatgatgttcctaatcgcggctttcattgtccgatgtgtttctctaggaag
caacttcttgtattgaaatcacattgcgagtctcagtccaaggatgctagtcaaaataag
cgtaacaagtcaggaaagacttcacaagttactgaggcaatcacaaatttggagactgtt
cagcagctactcctgaattatctctacgatgctgcggctgtggatgatggacatctgttt
actcgttggttctatctttgcctttggtacaaagatgaccctaattctcagcagaaattc
atgtattatgttgctagattaaagtcacaagcaattgtgcgtgactctggttctctttct
tcactaatgacgagagagttggcaaaaaagctaactttagcattgggacagaatagttct
ttctctagaggatttgacaagattctgcaagtgcttctggcaagtttgcgagagaactct
ccaatcattcgtgcaaaagcattgcgagcagttagtatcattataaatgttgatccagag
gttttgggtgataagcatgtccaaacagcagtggaagggaggttttgtgactccgctaca
tctgcccgagaagctgcattggaacttgtaggcagacatattgcttcctatcctgatgtt
ggtctgaagtactttgagaagttggcggaaagaataaaggatactggtgtaagtgtgcgg
aagcgtgctatcaaaatcattcgggacatgtgcacctcaaattctagcttctcggagttc
actactgcttgcgttgaaattatttcccgagtaaatgatgaggaatccagtgtacaggac
ctggtctgcaagacactttatgagttttggtttgaggaaccttctggttcacaacatcaa
tttttcggagatggaagttctgttccacttgaggtggctaagaaaacagagcaaattgtt
caaatgctcagaaggatgcccagtcttcaacctcttgtaactgtgattaaacgcaacata
gctcttgatttcttttcacaatctgctaaagctgttggcatcaaccctgtgtcccttgct
tcggtccgtaggcgctgcgagttgatgtgcaagtgcttattggagaaaatactgcaggtg
acggagatgaatactggagaaggagaggtgcacatgctaccatacatgaggctcttgcat
gctttttgtgttgttgatcctactctatgtgcaccagcttctgatccttctcagtttgtg
gtcacgctacaaccttatttgaagagtcaggctgataatcgagttgcggcccagcttttg
gagagtataatttttgtaattgattctgttttgcctttattacggaagcttcctcaaagt
gttgctgaagaacttgagcaagatctgaagcaaatgattgttcggcattctttcttgact
gttgtccatgcttgcatcaagtgtctttgctctgcgagtaaagttgctggaaagtgttca
actattattgaacatcttatccagttattcttcaaacgcctagctgccctaggtttcagt
aataaacagaactttcagcaagtgggacggtctcttttctgcttgggtttgctaatacgt
tacagtagctctttgttatatgtatctggttccagtaacaactcacatgttgctagcagc
atcaacctgtttaagagatatcttcagaccgaggactatgttatcaaggtccgctcattg
caggcactgggctatgttttaattgctcggccagaatgtatgctggaaaaggatgtaggg
aaaatcttggaggccacactttcttctaatactgatccacgactcaagatgcaatcactg
caaaacatgtatgagtatcttcttgatgctgaaagtcaaatgggaatagatagtgcaagt
gaaaatgaagcagctaatacggcagttggtggccctagtgtgccagttgctgcaggggct
ggtgataccaatatttgtgggggaatagttcagttgtattgggctaaaatcttagaaaga
tccttggatgtgaatgaacaagtgcgtcagtctgctcttaagattctggaagttgtattg
cgtcaaggtcttgtccatcctattacttgtgttccctttttgatagcgcttgaaatagat
cctcaggaggtgaactcaaagctggctcatcatttgttgatgaacatgaatgagaagtat
ccatccttctttgagagccgtcttggtgatggtctgcaaaagtcatttatgttcatacaa
gccatgaataaaggtggttctcaaagtttagatgctcaggctaaagctccaggtatcatg
tcaggaaagtcggaccctggctcatttgatcatgcaaagcatggggtgtctagaatctat
aagctcatccgtggaaatcgtctttcaaggaacaaatttatagcctcagttgtgcgcaaa
tttgatacaccaagcttgagtgattcagtagtctcgtttttaatatactgcactgaaatt
cttgcttcacttccattcacatcgcctgatgagcccctttatttgatctattctataaat
cggattattcaagttagggctggcacagtggaggcaaatatgaaaggatttctacagttt
ttacaagcaggtagtcaaaaaataaatggaagtgggagcattcaaacagagcccactcaa
cctattaagtgtgagagtgaaacaatggttaccaacgaaatccaggaagggttggaaagg
gatcgtggctgtgtagattatggatcagtgaattcatatatgccccatccggcatcatta
aatccacatggcatatccaatgttgatttgcacacgatccaggtggaatgtctcgcagcc
ggtgctttacagttgcttctgaggctaaagaggcacctcaagattgtgtatgatctaaat
gatgcccgttgtcaggcatattctccaaatgaaaccccaaaacccggggaaggtctttca
aggcaaaatcttcagttaaatgtgaaggaaattaacattgaccccccaaacaattatgaa
gactttgtccggagatatcaggatttcaagaatgccatgaaggaagatacagtggactat
gcagtatacacagcaaacatcaaaaggaaacgccctcctccaagaagaagtaggaagtgt
ggtcgaatgatgggtggtgatgatgaagatgatgaagacgatggagaatggggtagcgga
atgagaactagtgatagcggtagtggcagaagaagcagtagcaggttaaggcagcaatac
taa
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